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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SiM | 25144 | 2023-07-06 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-08-12 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-10-06 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-11-15 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-12-10 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.38 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.52 | 0.0 | 0.04 | 14.99 | 0.00 | 2.212 | 8.22 | 0.88 | 1.7 | 98.3 | 0.0 | 0.70 | 0.93 | 0.75 | 0.76 | 2.95 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2024-01-19 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 28.61 | 0.00 | 2.190 | 9.62 | 2.17 | 1.7 | 98.3 | 0.0 | 1.03 | 1.17 | 0.75 | 0.82 | 2.23 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2024-02-15 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 28.61 | 0.00 | 2.190 | 9.62 | 2.17 | 1.7 | 98.3 | 0.0 | 1.03 | 1.17 | 0.75 | 0.82 | 2.23 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2024-03-15 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 28.61 | 0.00 | 2.190 | 9.62 | 2.17 | 1.7 | 98.3 | 0.0 | 1.03 | 1.17 | 0.75 | 0.82 | 2.23 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2024-04-08 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 28.61 | 0.00 | 2.190 | 9.62 | 2.17 | 1.7 | 98.3 | 0.0 | 1.03 | 1.17 | 0.75 | 0.82 | 2.23 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2023-07-06 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 29.17 | 0.00 | 2.180 | 10.67 | 0.93 | 2.2 | 97.8 | 0.0 | 0.89 | 1.18 | 0.75 | 0.82 | 2.43 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2023-08-12 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 29.17 | 0.00 | 2.180 | 10.67 | 0.93 | 2.2 | 97.8 | 0.0 | 0.89 | 1.18 | 0.75 | 0.82 | 2.43 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2023-10-06 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 29.11 | 0.00 | 2.170 | 10.21 | 0.31 | 2.1 | 97.9 | 0.0 | 0.79 | 1.17 | 0.75 | 0.82 | 2.29 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2023-11-15 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 29.11 | 0.00 | 2.170 | 10.21 | 0.31 | 2.1 | 97.9 | 0.0 | 0.79 | 1.17 | 0.75 | 0.82 | 2.29 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2023-12-09 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.19 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.005 | 0.65 | 0.0 | 0.04 | 28.66 | 0.00 | 2.173 | 9.89 | 0.62 | 2.4 | 97.6 | 0.0 | 0.85 | 1.17 | 0.75 | 0.82 | 2.51 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2024-01-18 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.66 | 0.0 | 0.05 | 18.04 | 0.00 | 2.045 | 10.85 | 6.11 | 0.8 | 99.2 | 0.0 | -0.90 | 1.04 | 0.79 | 0.83 | 3.07 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2024-02-14 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.66 | 0.0 | 0.05 | 18.04 | 0.00 | 2.045 | 10.85 | 6.11 | 0.8 | 99.2 | 0.0 | -0.90 | 1.04 | 0.79 | 0.83 | 3.07 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2024-03-11 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.66 | 0.0 | 0.05 | 18.04 | 0.00 | 2.045 | 10.85 | 6.11 | 0.8 | 99.2 | 0.0 | -0.90 | 1.04 | 0.79 | 0.83 | 3.07 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 7YNo | 33967 | 2024-01-17 | 2022-07-31 | 2.8 | 2.92 | 2.23 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 12.19 | 0.00 | 2.252 | 22.12 | 0.00 | 7.3 | 92.7 | 0.0 | -3.47 | 0.41 | 0.77 | 5.69 | 3.1 | 0.003 | 0.67 | 0.0 | 0.05 | 14.57 | 0.00 | 2.263 | 8.01 | 1.94 | 2.5 | 97.5 | 0.0 | -2.04 | 0.36 | 0.42 | 0.79 | 4.68 | 2562 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7YNo | 33967 | 2024-02-13 | 2022-07-31 | 2.8 | 2.92 | 2.23 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 12.19 | 0.00 | 2.252 | 22.12 | 0.00 | 7.3 | 92.7 | 0.0 | -3.47 | 0.41 | 0.77 | 5.69 | 3.1 | 0.003 | 0.67 | 0.0 | 0.05 | 14.57 | 0.00 | 2.263 | 8.01 | 1.94 | 2.5 | 97.5 | 0.0 | -2.04 | 0.36 | 0.42 | 0.79 | 4.68 | 2562 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2024-04-08 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.38 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.7 | 0.003 | 0.55 | 0.0 | 0.04 | 15.06 | 0.00 | 2.188 | 8.41 | 1.25 | 1.5 | 98.5 | 0.0 | 0.48 | 0.93 | 0.76 | 0.78 | 3.12 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |