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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EFP | 28087 | 2024-03-10 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.004 | 0.89 | 0.0 | 0.04 | 18.96 | 0.00 | 2.081 | 25.08 | 4.02 | 11.8 | 88.2 | 0.0 | -2.48 | 0.89 | 0.84 | 0.73 | -0.30 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2024-02-13 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.004 | 0.89 | 0.0 | 0.04 | 18.96 | 0.00 | 2.081 | 25.08 | 4.02 | 11.8 | 88.2 | 0.0 | -2.48 | 0.89 | 0.84 | 0.73 | -0.30 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-07-03 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-10-03 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-11-13 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-08-09 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-12-07 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2023-09-27 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 18.75 | 0.00 | 2.083 | 23.79 | 0.38 | 9.6 | 90.4 | 0.0 | -2.53 | 0.88 | 0.84 | 0.73 | -0.29 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N8N | 24238 | 2023-08-12 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.74 | 0.0 | 0.04 | 28.70 | 0.01 | 2.032 | 25.58 | 0.31 | 6.5 | 93.3 | 0.3 | -0.47 | 1.28 | 0.87 | 0.80 | -0.27 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7R4R | 14315 | 2024-02-25 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 18.82 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.7 | 0.006 | 1.43 | 18.0 | 0.24 | 16.22 | 0.00 | 1.707 | 35.48 | 6.54 | 9.7 | 90.2 | 0.1 | -2.52 | 1.26 | 0.68 | 0.60 | -0.26 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✔ | 8T23 | 40979 | 2024-01-17 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-02-13 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-03-11 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7R4R | 14315 | 2024-03-25 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 18.82 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.7 | 0.006 | 1.43 | 18.0 | 0.24 | 16.22 | 0.00 | 1.707 | 35.48 | 6.54 | 9.7 | 90.2 | 0.1 | -2.52 | 1.26 | 0.68 | 0.60 | -0.26 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✔ | 8T23 | 40979 | 2024-04-06 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2024-03-26 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 22.20 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.005 | 0.99 | 2.0 | 0.04 | 24.17 | 0.01 | 1.748 | 42.81 | 1.76 | 10.4 | 89.0 | 0.6 | -2.39 | 2.18 | 0.66 | 0.42 | -0.25 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2024-02-28 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 22.20 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.005 | 0.99 | 2.0 | 0.04 | 24.17 | 0.01 | 1.748 | 42.81 | 1.76 | 10.4 | 89.0 | 0.6 | -2.39 | 2.18 | 0.66 | 0.42 | -0.25 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-12-07 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.71 | 0.0 | 0.03 | 16.08 | 0.00 | 2.061 | 8.55 | 1.01 | 6.2 | 93.8 | 0.0 | -1.13 | 1.35 | 0.28 | 0.06 | -0.23 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7LC9 | 23270 | 2024-03-10 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.004 | 0.68 | 0.0 | 0.05 | 17.25 | 0.00 | 2.139 | 28.50 | 10.32 | 11.2 | 88.8 | 0.0 | -3.62 | 0.66 | 0.69 | 0.79 | -0.22 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2024-04-05 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.004 | 0.68 | 0.0 | 0.05 | 17.25 | 0.00 | 2.139 | 28.50 | 10.32 | 11.2 | 88.8 | 0.0 | -3.62 | 0.66 | 0.69 | 0.79 | -0.22 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |