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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GF7 | 29980 | 2024-01-17 | 2023-03-07 | 4.8 | 3.61 | 4.18 | 4.4 | 0.003 | 0.68 | 0.0 | 0.06 | 10.15 | 0.00 | 1.681 | 53.15 | 0.00 | 10.2 | 89.8 | 0.0 | -4.11 | 0.33 | 0.53 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.06 | 14.16 | 0.00 | 2.361 | 17.41 | 0.00 | 18.2 | 81.8 | 0.0 | -3.89 | 2.04 | 0.35 | 0.59 | — | 3774 | 540 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8PoE | 17789 | 2024-01-19 | 2023-07-04 | 4.2 | 4.40 | 4.17 | 4.5 | 0.003 | 0.64 | 0.0 | 0.04 | 14.20 | 0.00 | 2.265 | 9.34 | 0.00 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.71 | — | 4.5 | 0.002 | 0.61 | 0.0 | 0.04 | 14.54 | 0.00 | 2.226 | 7.81 | 0.00 | 2.7 | 97.3 | 0.0 | 1.46 | 1.15 | 0.57 | 0.72 | — | 10947 | 1371 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T05 | 40935 | 2023-12-07 | 2023-05-31 | 3.22 | 3.71 | 3.26 | 3.7 | 0.014 | 1.85 | 1.0 | 0.26 | 16.96 | 0.01 | 2.120 | 2.80 | 0.93 | 5.8 | 93.9 | 0.3 | -2.10 | 0.45 | 0.74 | 3.17 | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 16.31 | 0.01 | 2.047 | 7.83 | 0.00 | 4.7 | 95.3 | 0.0 | 0.89 | 1.01 | 0.59 | 0.84 | 2.49 | 5104 | 631 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8PoE | 17789 | 2024-04-07 | 2023-07-04 | 4.2 | 4.40 | 4.17 | 4.5 | 0.003 | 0.64 | 0.0 | 0.04 | 14.20 | 0.00 | 2.265 | 9.34 | 0.00 | 2.8 | 97.2 | 0.0 | 1.48 | 0.57 | 0.71 | — | 4.5 | 0.002 | 0.61 | 0.0 | 0.04 | 14.54 | 0.00 | 2.226 | 7.81 | 0.00 | 2.7 | 97.3 | 0.0 | 1.46 | 1.15 | 0.57 | 0.72 | — | 10947 | 1371 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K3Y | 36867 | 2024-02-22 | 2023-07-17 | 4.42 | 8.76 | 4.94 | 4.5 | 0.006 | 1.15 | 0.0 | 0.07 | 14.64 | 0.01 | 2.232 | 17.66 | 0.05 | 6.9 | 93.1 | 0.0 | -3.10 | 0.86 | 0.60 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 14.30 | 0.01 | 1.984 | 34.76 | 0.00 | 7.5 | 92.5 | 0.0 | -1.58 | 0.45 | 0.89 | 0.72 | — | 34589 | 4396 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 8EDL | 28035 | 2023-12-07 | 2022-09-05 | 3.7 | 3.30 | 3.60 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 11.07 | 0.00 | 2.307 | 6.09 | 0.00 | 2.1 | 97.7 | 0.3 | 2.83 | 0.62 | 0.61 | -0.09 | 3.1 | 0.002 | 0.56 | 0.0 | 0.03 | 13.69 | 0.00 | 2.346 | 6.09 | 0.00 | 3.1 | 96.9 | 0.0 | 3.49 | 1.16 | 0.68 | 0.73 | 2.92 | 2470 | 395 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GF7 | 29980 | 2023-12-07 | 2023-03-07 | 4.8 | 3.61 | 4.18 | 4.4 | 0.003 | 0.68 | 0.0 | 0.06 | 10.15 | 0.00 | 1.681 | 53.15 | 0.00 | 10.2 | 89.8 | 0.0 | -4.11 | 0.33 | 0.53 | — | 4.4 | 0.006 | 1.12 | 0.0 | 0.06 | 14.43 | 0.00 | 2.409 | 17.93 | 0.00 | 14.8 | 85.2 | 0.0 | -3.89 | 2.20 | 0.33 | 0.54 | — | 3774 | 540 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8H36 | 34452 | 2024-02-22 | 2022-10-08 | 4.6 | 3.34 | 4.57 | 3.3 | 0.008 | 1.03 | 15.0 | 0.07 | 17.13 | 0.00 | 2.201 | 13.04 | 14.08 | 8.8 | 89.7 | 1.5 | -3.21 | 0.53 | 0.50 | — | 1.9 | 0.003 | 0.77 | 0.0 | 0.05 | 13.08 | 0.00 | 2.067 | 18.80 | 0.00 | 8.4 | 91.3 | 0.3 | -1.15 | 1.09 | 0.58 | 0.65 | — | 28650 | 3507 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 8UDG | 42149 | 2024-03-18 | 2023-09-28 | 4.98 | 6.27 | 5.10 | 5.0 | 0.004 | 0.65 | 0.0 | 0.04 | 11.43 | 0.00 | 2.089 | 3.07 | 0.00 | 2.8 | 97.1 | 0.2 | -0.18 | 0.86 | 0.74 | — | 5.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.75 | 0.00 | 1.953 | 12.44 | 0.00 | 4.9 | 94.9 | 0.2 | 0.67 | 1.04 | 0.87 | 0.76 | — | 19524 | 1317 | 7 | 0 | 0 | 0 | 9627 | logfile |
✔ | 8iBZ | 35350 | 2023-12-09 | 2023-02-10 | 3.04 | 3.25 | 3.07 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 23.02 | 0.00 | 2.190 | 9.49 | 0.29 | 4.3 | 95.6 | 0.1 | 0.68 | 0.73 | 0.74 | 1.64 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 22.26 | 0.00 | 2.076 | 9.86 | 0.00 | 5.4 | 94.5 | 0.1 | 0.83 | 0.35 | 0.76 | 0.80 | 1.78 | 10273 | 817 | 3 | 180 | 1 | 0 | 0 | logfile |
✔ | 8EVJ | 28631 | 2024-03-16 | 2022-10-20 | 4.1 | 4.84 | 4.24 | 3.9 | 0.005 | 0.94 | 0.0 | 0.05 | 26.05 | 0.01 | 2.284 | 6.05 | 0.09 | 4.0 | 96.0 | 0.0 | -1.52 | 0.92 | 0.86 | — | 3.9 | 0.008 | 0.79 | 0.0 | 0.04 | 25.86 | 0.01 | 2.016 | 24.81 | 0.00 | 5.6 | 94.4 | 0.0 | 0.12 | 0.49 | 0.92 | 0.87 | — | 15951 | 1301 | 13 | 276 | 0 | 0 | 0 | logfile |
✔ | 8GF7 | 29980 | 2024-04-05 | 2023-03-07 | 4.8 | 3.61 | 4.18 | 4.4 | 0.003 | 0.68 | 0.0 | 0.06 | 10.15 | 0.00 | 1.681 | 53.15 | 0.00 | 10.2 | 89.8 | 0.0 | -4.11 | 0.33 | 0.53 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.06 | 14.16 | 0.00 | 2.361 | 17.41 | 0.00 | 18.2 | 81.8 | 0.0 | -3.89 | 2.04 | 0.35 | 0.59 | — | 3774 | 540 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8H5B | 34490 | 2024-01-18 | 2022-10-12 | 4.03 | 4.23 | 3.98 | 4.1 | 0.005 | 0.74 | 0.0 | 0.04 | 12.98 | 0.01 | 1.882 | 23.17 | 0.00 | 4.5 | 95.5 | 0.0 | -1.67 | 0.79 | 0.73 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 13.37 | 0.00 | 2.138 | 21.09 | 0.00 | 4.0 | 96.0 | 0.0 | 0.54 | 1.03 | 0.78 | 0.72 | — | 8570 | 1075 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H5B | 34490 | 2024-04-06 | 2022-10-12 | 4.03 | 4.23 | 3.98 | 4.1 | 0.005 | 0.74 | 0.0 | 0.04 | 12.98 | 0.01 | 1.882 | 23.17 | 0.00 | 4.5 | 95.5 | 0.0 | -1.67 | 0.79 | 0.73 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 13.37 | 0.00 | 2.138 | 21.09 | 0.00 | 4.0 | 96.0 | 0.0 | 0.54 | 1.03 | 0.78 | 0.72 | — | 8570 | 1075 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XKW | 33209 | 2023-12-07 | 2022-04-20 | 3.1 | 3.30 | — | 3.4 | 0.007 | 1.61 | 0.0 | 0.06 | 14.10 | 0.01 | 1.547 | 9.68 | 1.11 | 3.0 | 96.4 | 0.6 | -1.01 | 0.61 | 0.77 | 3.43 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 15.89 | 0.00 | 2.187 | 6.29 | 0.00 | 3.8 | 96.2 | 0.0 | -0.13 | 0.45 | 0.61 | 0.79 | 2.73 | 4132 | 499 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Q98 | 18271 | 2023-12-08 | 2023-08-20 | 1.75 | 1.75 | 1.77 | 1.8 | 0.011 | 1.66 | 0.0 | 0.07 | 9.83 | 0.01 | 2.543 | 0.00 | 0.00 | 0.5 | 99.5 | 0.0 | -0.80 | 0.22 | 0.65 | 8.64 | 1.8 | 0.002 | 0.51 | 0.0 | 0.05 | 14.79 | 0.00 | 2.418 | 1.99 | 0.00 | 0.2 | 99.8 | 0.0 | -0.45 | 1.38 | 0.43 | 0.90 | 7.86 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8EVJ | 28631 | 2024-02-16 | 2022-10-20 | 4.1 | 4.84 | 4.24 | 3.9 | 0.005 | 0.94 | 0.0 | 0.05 | 26.05 | 0.01 | 2.284 | 6.05 | 0.09 | 4.0 | 96.0 | 0.0 | -1.52 | 0.92 | 0.86 | — | 3.9 | 0.008 | 0.79 | 0.0 | 0.04 | 25.86 | 0.01 | 2.016 | 24.81 | 0.00 | 5.6 | 94.4 | 0.0 | 0.12 | 0.49 | 0.92 | 0.87 | — | 15951 | 1301 | 13 | 276 | 0 | 0 | 0 | logfile |
✔ | 8EVJ | 28631 | 2023-12-10 | 2022-10-20 | 4.1 | 4.84 | 4.24 | 3.9 | 0.005 | 0.94 | 0.0 | 0.05 | 26.05 | 0.01 | 2.284 | 6.05 | 0.09 | 4.0 | 96.0 | 0.0 | -1.52 | 0.92 | 0.86 | — | 3.9 | 0.007 | 0.74 | 0.0 | 0.04 | 25.85 | 0.00 | 2.032 | 24.03 | 0.00 | 5.6 | 94.4 | 0.0 | 0.17 | 0.49 | 0.92 | 0.87 | — | 15951 | 1301 | 13 | 276 | 0 | 0 | 0 | logfile |
✔ | 8BA7 | 15939 | 2024-04-06 | 2022-10-11 | 4.4 | 4.48 | 4.42 | 4.2 | 0.002 | 0.52 | 3.0 | 0.06 | 13.64 | 0.00 | 1.888 | 12.29 | 0.00 | 3.6 | 96.4 | 0.0 | 1.23 | 0.85 | 0.82 | — | 4.2 | 0.003 | 0.53 | 2.0 | 0.06 | 13.81 | 0.00 | 1.853 | 12.19 | 0.00 | 4.2 | 95.8 | 0.0 | 1.22 | 0.30 | 0.85 | 0.82 | — | 109676 | 7336 | 14 | 0 | 0 | 0 | 55706 | logfile |
✔ | 8BA7 | 15939 | 2024-03-11 | 2022-10-11 | 4.4 | 4.48 | 4.42 | 4.2 | 0.002 | 0.52 | 3.0 | 0.06 | 13.64 | 0.00 | 1.888 | 12.29 | 0.00 | 3.6 | 96.4 | 0.0 | 1.23 | 0.85 | 0.82 | — | 4.2 | 0.003 | 0.53 | 2.0 | 0.06 | 13.81 | 0.00 | 1.853 | 12.19 | 0.00 | 4.2 | 95.8 | 0.0 | 1.22 | 0.30 | 0.85 | 0.82 | — | 109676 | 7336 | 14 | 0 | 0 | 0 | 55706 | logfile |