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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7T6X | 25730 | 2023-12-08 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 10.54 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 8DEU | 27399 | 2024-04-13 | 2022-06-21 | 2.95 | 3.22 | 3.03 | 3.1 | 0.006 | 0.97 | 0.0 | 0.05 | 15.99 | 0.00 | 2.211 | 14.97 | 3.07 | 4.7 | 95.3 | 0.0 | -1.69 | 0.68 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29088 | 3130 | 7 | 0 | 27 | 0 | 4959 | logfile |
✘ | 8B6C | 15863 | 2024-02-21 | 2022-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139959 | 6963 | 61 | 3890 | 184 | 0 | 0 | logfile |
✘ | 8B6C | 15863 | 2024-03-19 | 2022-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139959 | 6963 | 61 | 3890 | 184 | 0 | 0 | logfile |
✘ | 8B6C | 15863 | 2023-07-15 | 2022-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139959 | 6963 | 61 | 3890 | 184 | 0 | 0 | logfile |
✘ | 8B6C | 15863 | 2023-08-23 | 2022-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139959 | 6963 | 61 | 3890 | 184 | 0 | 0 | logfile |
✘ | 8B6C | 15863 | 2023-12-15 | 2022-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139959 | 6963 | 61 | 3890 | 184 | 0 | 0 | logfile |
✘ | 7PZP | 13735 | 2024-04-14 | 2021-10-13 | 3.5 | 3.29 | — | 3.2 | 0.007 | 1.02 | 0.0 | 0.07 | 14.30 | 0.01 | 2.128 | 6.10 | 0.00 | 2.0 | 98.0 | 0.0 | 2.29 | 0.72 | 0.67 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15602 | 1978 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PZP | 13735 | 2023-11-20 | 2021-10-13 | 3.5 | 3.29 | — | 3.2 | 0.007 | 1.02 | 0.0 | 0.07 | 14.30 | 0.01 | 2.128 | 6.10 | 0.00 | 2.0 | 98.0 | 0.0 | 2.29 | 0.72 | 0.67 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15602 | 1978 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XW5 | 33491 | 2024-01-19 | 2022-05-26 | 2.96 | 3.19 | 2.99 | 3.2 | 0.014 | 1.88 | 8.0 | 0.10 | 12.54 | 0.02 | 2.119 | 2.60 | 0.53 | 4.6 | 95.4 | 0.0 | -0.98 | 0.61 | 0.73 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12618 | 1522 | 10 | 0 | 27 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-04-08 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-01-19 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-07-05 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-02-15 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-08-11 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2024-02-14 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 15.96 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-09-29 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2024-04-07 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 15.96 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 7RBT | 24401 | 2023-07-06 | 2021-07-06 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.82 | — | — | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.87 | — | — | — | 2.09 | 10881 | 1386 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JAP | 3048 | 2023-10-18 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.48 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |