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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SD3 | 10147 | 2024-01-19 | 2019-07-26 | 3.3 | 3.67 | — | 3.2 | 0.008 | 0.84 | 19.0 | 0.04 | 13.90 | 0.01 | 0.390 | 14.32 | 1.24 | 10.8 | 88.5 | 0.7 | -5.37 | 0.79 | 0.84 | 2.93 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.24 | 0.00 | 2.154 | 10.68 | 2.41 | 2.9 | 97.1 | 0.0 | -0.26 | 0.68 | 0.79 | 0.85 | 2.34 | 63144 | 8212 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL1 | 16709 | 2024-01-20 | 2023-02-16 | 3.35 | 3.67 | 2.87 | 3.6 | 0.008 | 0.93 | 0.0 | 0.06 | 12.18 | 0.01 | 0.393 | 14.11 | 0.54 | 0.0 | 99.1 | 0.9 | -1.05 | 0.61 | 0.75 | 3.54 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.24 | 0.00 | 2.182 | 11.26 | 0.72 | 2.1 | 97.4 | 0.5 | 1.93 | 0.64 | 0.65 | 0.78 | 3.06 | 10494 | 1362 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KZo | 23084 | 2024-01-17 | 2020-12-10 | 3.3 | 2.88 | — | 3.3 | 0.005 | 0.86 | 1.0 | 0.05 | 15.08 | 0.01 | 0.399 | 14.01 | 0.29 | 4.0 | 96.0 | 0.0 | -1.81 | 0.77 | 0.76 | 2.07 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 17.06 | 0.00 | 1.858 | 11.47 | 2.95 | 3.5 | 96.5 | 0.0 | 0.34 | 1.49 | 0.78 | 0.79 | 1.61 | 54110 | 6873 | 34 | 8 | 14 | 0 | 0 | logfile |
✔ | 6FVW | 4322 | 2024-01-18 | 2018-03-05 | 4.5 | 4.60 | — | 4.6 | 0.035 | 3.52 | 888.0 | 0.20 | 17.66 | 0.03 | 0.436 | 3.52 | 2.98 | 5.7 | 92.3 | 2.0 | -2.29 | 0.50 | 0.54 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.00 | 0.00 | 1.910 | 18.23 | 0.07 | 4.6 | 95.2 | 0.2 | -0.55 | 2.32 | 0.55 | 0.77 | — | 110594 | 14032 | 59 | 0 | 12 | 20 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-01-20 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i1X | 0326 | 2024-01-17 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 16.50 | 0.00 | 2.113 | 17.73 | 2.99 | 3.9 | 95.9 | 0.3 | -1.11 | 1.03 | 0.65 | 0.61 | 0.90 | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSZ | 25417 | 2024-01-20 | 2021-11-11 | 3.25 | 3.49 | — | 3.5 | 0.014 | 1.70 | 20.0 | 0.12 | 14.90 | 0.01 | 0.467 | 7.21 | 6.31 | 5.5 | 94.5 | 0.0 | -2.29 | 0.56 | 0.79 | 3.16 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.55 | 0.00 | 2.230 | 5.73 | 2.12 | 4.1 | 95.9 | 0.0 | 0.92 | 0.57 | 0.70 | 0.83 | 3.69 | 15283 | 1908 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2024-01-19 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.30 | 0.00 | 2.069 | 13.36 | 5.80 | 7.8 | 91.5 | 0.6 | -0.34 | 1.75 | 0.59 | 0.73 | 1.09 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HQo | 34952 | 2024-01-19 | 2022-12-13 | 3.2 | 3.45 | 3.81 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 13.20 | 0.01 | 0.497 | 6.45 | 0.00 | 2.6 | 97.4 | 0.0 | -1.42 | 0.54 | 0.57 | 0.18 | 3.4 | 0.007 | 0.76 | 0.0 | 0.04 | 16.42 | 0.00 | 1.846 | 41.86 | 4.11 | 6.3 | 93.6 | 0.0 | -0.30 | 1.76 | 0.64 | 0.81 | 1.51 | 62613 | 7656 | 33 | 0 | 0 | 0 | 1902 | logfile |
✘ | 7L20 | 23121 | 2024-01-18 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 19.41 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2024-01-17 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 13.99 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.037 | 3.41 | 17.0 | 0.29 | 25.51 | 0.01 | 0.387 | 10.75 | 2.97 | 1.5 | 98.5 | 0.0 | 1.74 | 1.11 | 0.69 | 0.81 | 2.97 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6F07 | 4163 | 2024-01-19 | 2017-11-17 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 10.28 | 0.01 | 0.559 | 5.81 | 0.70 | 6.1 | 93.7 | 0.2 | -3.04 | 0.47 | 0.57 | 1.27 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.67 | 0.00 | 2.151 | 10.57 | 2.54 | 4.6 | 95.4 | 0.0 | 1.04 | 1.51 | 0.56 | 0.71 | 0.82 | 10149 | 1227 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2024-01-17 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.18 | 0.01 | 2.270 | 6.00 | 1.62 | 5.8 | 94.2 | 0.0 | 0.31 | 0.56 | 0.61 | 0.78 | 1.33 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2024-01-18 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.17 | 0.00 | 2.057 | 14.65 | 2.61 | 6.9 | 92.7 | 0.4 | 0.35 | 0.80 | 0.63 | 0.80 | 1.69 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2024-01-18 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.38 | 5.0 | 0.18 | 20.23 | 0.01 | 0.584 | 27.88 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 17.88 | 0.00 | 2.163 | 12.28 | 3.56 | 6.7 | 93.1 | 0.3 | 0.08 | 0.64 | 0.45 | 0.76 | 1.18 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |
✔ | 7PBX | 13308 | 2024-01-18 | 2021-08-02 | 3.43 | 3.70 | 3.43 | 3.1 | 0.032 | 2.53 | 206.0 | 0.21 | 19.43 | 0.02 | 0.597 | 32.75 | 11.71 | 3.1 | 95.3 | 1.6 | 1.29 | 0.69 | 0.65 | 1.83 | 3.2 | 0.003 | 0.75 | 0.0 | 0.04 | 17.10 | 0.00 | 1.907 | 13.75 | 1.35 | 4.6 | 95.3 | 0.1 | 1.35 | 1.42 | 0.90 | 0.86 | 2.10 | 59472 | 8015 | 35 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2024-01-18 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 15.23 | 0.01 | 2.190 | 10.00 | 4.97 | 9.6 | 90.4 | 0.0 | -2.96 | 1.54 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2024-01-19 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.004 | 0.88 | 3.0 | 0.04 | 17.62 | 0.00 | 1.935 | 18.68 | 4.41 | 4.9 | 94.6 | 0.5 | 0.80 | 1.69 | 0.89 | 0.85 | 1.26 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 6YAM | 10761 | 2024-01-20 | 2020-03-12 | 3.6 | 3.47 | — | 3.5 | 0.021 | 2.06 | 55.0 | 0.12 | 19.49 | 0.02 | 0.634 | 17.64 | 3.01 | 10.8 | 85.2 | 4.0 | -4.49 | 0.39 | 0.52 | 0.80 | 3.4 | 0.005 | 0.91 | 3.0 | 0.04 | 20.67 | 0.01 | 1.764 | 14.75 | 4.61 | 11.2 | 88.4 | 0.4 | -2.38 | 1.56 | 0.46 | 0.65 | 1.11 | 118536 | 9811 | 51 | 1863 | 5 | 0 | 0 | logfile |
✔ | 7PBJ | 13293 | 2024-01-18 | 2021-08-02 | 3.4 | 3.54 | 3.40 | 3.2 | 0.018 | 2.20 | 140.0 | 0.13 | 19.50 | 0.01 | 0.650 | 29.74 | 11.71 | 2.5 | 96.9 | 0.6 | 1.69 | 0.71 | 0.67 | 2.07 | 3.2 | 0.004 | 0.74 | 1.0 | 0.04 | 17.55 | 0.00 | 1.892 | 15.19 | 1.99 | 3.3 | 96.6 | 0.1 | 1.08 | 2.34 | 0.89 | 0.86 | 1.98 | 59486 | 8015 | 42 | 0 | 28 | 14 | 0 | logfile |