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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6U5K | 20648 | 2024-01-18 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DZR | 27806 | 2024-01-18 | 2022-08-08 | 2.61 | 2.15 | 2.73 | 2.0 | 0.005 | 0.70 | 0.0 | 0.05 | 13.75 | 0.00 | 2.224 | 4.85 | 0.00 | 3.3 | 96.7 | 0.0 | -0.09 | 0.76 | 0.74 | 3.46 | 1.9 | 0.004 | 0.61 | 0.0 | 0.04 | 15.79 | 0.00 | 2.092 | 9.31 | 2.49 | 4.1 | 95.9 | 0.0 | 0.52 | 0.32 | 0.78 | 0.79 | 3.22 | 7944 | 1073 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7P02 | 13141 | 2024-01-18 | 2021-06-29 | 2.87 | 3.05 | — | 3.1 | 0.016 | 1.51 | 0.0 | 0.10 | 11.73 | 0.00 | 2.086 | 6.28 | 1.12 | 4.6 | 95.4 | 0.0 | -1.72 | 0.66 | 0.81 | 3.20 | 3.1 | 0.005 | 0.72 | 0.0 | 0.05 | 15.32 | 0.00 | 2.054 | 11.50 | 3.27 | 2.4 | 97.6 | 0.0 | 0.18 | 0.95 | 0.65 | 0.85 | 3.54 | 9062 | 1138 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2024-01-17 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 14.86 | 0.01 | 2.150 | 18.13 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 14.92 | 0.00 | 2.111 | 16.05 | 2.43 | 16.4 | 83.4 | 0.2 | -4.18 | 0.51 | 0.82 | 0.65 | 1.07 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8DGJ | 27427 | 2024-01-20 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.07 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 14.02 | 0.01 | 2.063 | 20.23 | 0.00 | 7.6 | 92.3 | 0.1 | -0.59 | 0.60 | 0.68 | 0.55 | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EM4 | 28233 | 2024-01-18 | 2022-09-26 | 2.83 | 3.60 | 2.87 | 2.8 | 0.005 | 0.99 | 0.0 | 0.06 | 11.79 | 0.01 | 2.135 | 1.14 | 0.13 | 4.5 | 95.5 | 0.0 | -0.47 | 0.72 | 0.66 | 2.74 | 2.8 | 0.004 | 0.69 | 0.0 | 0.05 | 12.86 | 0.00 | 2.151 | 8.35 | 0.63 | 4.6 | 95.4 | 0.0 | -0.63 | 0.58 | 0.83 | 0.88 | 2.69 | 59410 | 7636 | 6 | 0 | 178 | 0 | 0 | logfile |
✔ | 7TBF | 25797 | 2024-01-17 | 2021-12-21 | 3.1 | 3.60 | 3.16 | 3.4 | 0.008 | 0.87 | 0.0 | 0.05 | 13.38 | 0.01 | 2.064 | 6.47 | 0.00 | 14.9 | 84.6 | 0.5 | -3.53 | 0.83 | 0.81 | 3.20 | 3.4 | 0.004 | 0.74 | 0.0 | 0.04 | 15.30 | 0.00 | 2.226 | 8.39 | 3.58 | 14.2 | 85.3 | 0.5 | -2.51 | 0.99 | 0.84 | 0.85 | 2.79 | 6617 | 857 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8B8Q | 15919 | 2024-01-19 | 2022-10-04 | 2.94 | 3.52 | 2.88 | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 12.63 | 0.00 | 2.126 | 11.28 | 7.93 | 4.8 | 95.2 | 0.0 | 0.94 | 0.66 | 0.80 | 2.92 | 3.4 | 0.006 | 0.72 | 0.0 | 0.05 | 15.31 | 0.01 | 2.081 | 14.41 | 4.37 | 5.3 | 94.7 | 0.0 | 0.43 | 1.02 | 0.68 | 0.82 | 2.94 | 11370 | 1382 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6U5J | 20647 | 2024-01-18 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.71 | 0.0 | 0.05 | 12.52 | 0.01 | 2.267 | 5.12 | 3.03 | 7.7 | 92.3 | 0.0 | -5.32 | 0.58 | 0.84 | 2.67 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.74 | 0.00 | 2.103 | 9.39 | 3.56 | 7.2 | 92.8 | 0.0 | -1.43 | 0.69 | 0.59 | 0.85 | 2.11 | 59616 | 7878 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2024-01-17 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.00 | 0.0 | 0.00 | 5.05 | 0.00 | 2.580 | 6.76 | 0.00 | 12.3 | 86.7 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiX | 12935 | 2024-01-17 | 2021-05-12 | 3.6 | 3.76 | — | 3.7 | 0.007 | 1.08 | 0.0 | 0.06 | 17.40 | 0.01 | 2.133 | 8.89 | 0.97 | 3.5 | 96.5 | 0.0 | -1.19 | 0.58 | 0.74 | 1.74 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 15.70 | 0.00 | 2.271 | 10.69 | 4.03 | 3.8 | 96.2 | 0.0 | -0.31 | 1.50 | 0.63 | 0.76 | 1.71 | 5869 | 716 | 5 | 0 | 17 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2024-01-18 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CKY | 16706 | 2024-01-19 | 2023-02-16 | 2.6 | 3.00 | 2.57 | 2.9 | 0.004 | 0.82 | 0.0 | 0.05 | 12.58 | 0.01 | 1.934 | 7.36 | 0.54 | 0.5 | 99.5 | 0.0 | 0.20 | 0.62 | 0.77 | 5.97 | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 17.93 | 0.00 | 2.312 | 8.77 | 2.81 | 0.8 | 99.2 | 0.0 | 1.99 | 0.60 | 0.62 | 0.79 | 4.55 | 10338 | 1344 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSZ | 25417 | 2024-01-20 | 2021-11-11 | 3.25 | 3.49 | — | 3.5 | 0.014 | 1.70 | 20.0 | 0.12 | 14.90 | 0.01 | 0.467 | 7.21 | 6.31 | 5.5 | 94.5 | 0.0 | -2.29 | 0.56 | 0.79 | 3.16 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.55 | 0.00 | 2.230 | 5.73 | 2.12 | 4.1 | 95.9 | 0.0 | 0.92 | 0.57 | 0.70 | 0.83 | 3.69 | 15283 | 1908 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2024-01-17 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 14.09 | 0.01 | 2.143 | 18.06 | 0.00 | 5.7 | 94.3 | 0.0 | -2.85 | 2.92 | 0.44 | 0.43 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DS9 | 27686 | 2024-01-19 | 2022-07-21 | 3.17 | 3.61 | 3.26 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 17.32 | 0.01 | 2.201 | 7.01 | 0.53 | 2.6 | 97.4 | 0.0 | 0.06 | 0.57 | 0.61 | 1.30 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 16.99 | 0.00 | 2.060 | 10.87 | 4.64 | 2.9 | 97.1 | 0.0 | 1.27 | 1.91 | 0.56 | 0.68 | 0.97 | 12039 | 1418 | 14 | 0 | 4 | 6 | 0 | logfile |
✔ | 7QP9 | 14115 | 2024-01-19 | 2022-01-03 | 2.89 | 3.12 | 2.88 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 15.53 | 0.00 | 2.249 | 6.44 | 0.00 | 3.6 | 96.4 | 0.0 | 2.00 | 0.58 | 0.81 | 3.64 | 3.2 | 0.003 | 0.49 | 0.0 | 0.04 | 16.52 | 0.00 | 2.121 | 10.70 | 1.08 | 3.6 | 96.4 | 0.0 | 2.00 | 0.72 | 0.55 | 0.83 | 3.70 | 11087 | 654 | 6 | 0 | 4 | 127 | 5668 | logfile |
✔ | 6SGZ | 10191 | 2024-01-19 | 2019-08-05 | 3.9 | 4.15 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 13.52 | 0.00 | 2.203 | 12.28 | 0.00 | 10.3 | 89.4 | 0.3 | -4.16 | 0.66 | 0.82 | 1.40 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 15.51 | 0.00 | 2.148 | 13.20 | 3.93 | 9.7 | 90.2 | 0.1 | -0.41 | 1.22 | 0.65 | 0.82 | 1.34 | 11177 | 1505 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7E | 28904 | 2024-01-17 | 2022-11-18 | 4.13 | 4.21 | 4.35 | 4.1 | 0.005 | 0.98 | 0.0 | 0.05 | 15.17 | 0.01 | 2.266 | 14.09 | 0.53 | 7.4 | 92.6 | 0.0 | -3.38 | 0.55 | 0.57 | — | 4.1 | 0.004 | 0.87 | 0.0 | 0.05 | 13.79 | 0.01 | 2.117 | 24.00 | 0.00 | 7.8 | 92.2 | 0.0 | -2.99 | 2.05 | 0.58 | 0.63 | — | 6642 | 814 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2024-01-18 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.06 | 0.00 | 2.092 | 22.70 | 0.00 | 6.5 | 93.4 | 0.1 | -0.69 | 2.09 | 0.46 | 0.57 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |