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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VGJ | 31971 | 2024-01-19 | 2021-09-16 | 3.98 | 3.67 | — | 3.5 | 0.007 | 0.91 | 0.0 | 0.05 | 15.69 | 0.01 | 2.160 | 26.07 | 0.48 | 16.4 | 83.6 | 0.0 | -3.55 | 0.62 | 0.78 | 2.06 | 3.5 | 0.003 | 0.72 | 0.0 | 0.04 | 16.82 | 0.00 | 2.189 | 16.94 | 2.17 | 11.0 | 89.0 | 0.0 | -1.97 | 0.45 | 0.61 | 0.77 | 1.75 | 11460 | 1414 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6FEQ | 4246 | 2024-01-19 | 2018-01-03 | 3.6 | 3.83 | — | 3.7 | 0.011 | 1.05 | 0.0 | 0.06 | 11.02 | 0.01 | 2.271 | 4.71 | 0.15 | 5.8 | 94.2 | 0.0 | -4.17 | 0.66 | 0.83 | 3.20 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 13.45 | 0.00 | 2.160 | 10.11 | 1.70 | 4.5 | 95.5 | 0.0 | 0.23 | 1.64 | 0.67 | 0.83 | 2.59 | 12397 | 1582 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7VGH | 31969 | 2024-01-19 | 2021-09-16 | 3.39 | 3.14 | — | 3.3 | 0.005 | 0.75 | 0.0 | 0.05 | 15.72 | 0.00 | 1.989 | 9.00 | 0.23 | 12.4 | 87.6 | 0.0 | -2.72 | 0.67 | 0.84 | 2.72 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 16.30 | 0.00 | 1.986 | 7.46 | 1.98 | 11.4 | 88.6 | 0.0 | -1.84 | 1.11 | 0.67 | 0.86 | 2.35 | 12404 | 1521 | 7 | 0 | 14 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2024-01-19 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✔ | 6XoT | 22279 | 2024-01-18 | 2020-07-07 | 3.9 | 4.56 | 3.90 | 4.1 | 0.006 | 1.07 | 0.0 | 0.06 | 14.01 | 0.01 | 2.272 | 5.76 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.86 | 0.74 | 0.81 | 4.2 | 0.003 | 0.82 | 0.0 | 0.05 | 15.95 | 0.00 | 2.097 | 17.28 | 1.40 | 2.6 | 97.4 | 0.0 | 0.90 | 1.81 | 0.87 | 0.80 | 1.12 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W01 | 32233 | 2024-01-19 | 2021-11-17 | 3.3 | 3.43 | — | 3.4 | 0.011 | 1.11 | 1.0 | 0.06 | 16.67 | 0.01 | 1.717 | 9.85 | 0.60 | 13.3 | 85.9 | 0.8 | -4.55 | 0.68 | 0.86 | 2.97 | 3.4 | 0.002 | 0.67 | 0.0 | 0.04 | 17.07 | 0.00 | 2.135 | 6.25 | 2.17 | 8.3 | 91.6 | 0.1 | -1.93 | 1.58 | 0.66 | 0.86 | 1.70 | 12724 | 1598 | 1 | 0 | 7 | 0 | 0 | logfile |
✔ | 6C96 | 7434 | 2024-01-19 | 2018-01-25 | 3.4 | 3.54 | — | 3.5 | 0.010 | 1.05 | 0.0 | 0.06 | 10.43 | 0.01 | 2.277 | 3.50 | 0.30 | 5.1 | 94.9 | 0.0 | -4.38 | 0.58 | 0.82 | 3.11 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 15.40 | 0.00 | 2.149 | 7.82 | 2.05 | 4.0 | 96.0 | 0.0 | 1.01 | 0.74 | 0.58 | 0.83 | 1.90 | 12090 | 1446 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 6XoS | 22278 | 2024-01-18 | 2020-07-07 | 3.7 | 4.30 | 3.63 | 3.9 | 0.009 | 1.09 | 0.0 | 0.06 | 13.21 | 0.01 | 2.225 | 2.95 | 0.00 | 2.4 | 97.6 | 0.0 | -1.45 | 0.89 | 0.82 | 1.85 | 3.9 | 0.005 | 0.78 | 0.0 | 0.04 | 14.35 | 0.00 | 2.144 | 11.59 | 0.70 | 2.5 | 97.5 | 0.0 | 1.43 | 0.98 | 0.89 | 0.86 | 1.84 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZRM | 14919 | 2024-01-19 | 2022-05-04 | 3.7 | 3.18 | 3.69 | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 14.87 | 0.01 | 2.260 | 7.18 | 0.00 | 5.1 | 94.9 | 0.0 | -1.35 | 0.64 | 0.79 | 0.91 | 3.5 | 0.005 | 0.63 | 0.0 | 0.04 | 16.42 | 0.00 | 2.136 | 12.90 | 2.03 | 5.2 | 94.8 | 0.0 | -0.10 | 1.07 | 0.64 | 0.81 | 1.32 | 10839 | 1450 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7ZRi | 14915 | 2024-01-19 | 2022-05-04 | 3.5 | 3.62 | 3.50 | 3.6 | 0.006 | 0.92 | 0.0 | 0.05 | 16.16 | 0.01 | 2.196 | 7.56 | 0.00 | 4.6 | 95.4 | 0.0 | -1.22 | 0.70 | 0.82 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11014 | 1450 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2024-01-19 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.89 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.003 | 0.75 | 0.0 | 0.06 | 18.18 | 0.00 | 2.151 | 9.17 | 5.05 | 4.0 | 95.8 | 0.2 | 0.85 | 1.41 | 0.59 | 0.82 | 1.74 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6oSA | 20181 | 2024-01-18 | 2019-05-01 | 3.0 | 3.37 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 11.09 | 0.01 | 2.210 | 4.42 | 0.00 | 3.5 | 96.5 | 0.0 | -2.75 | 0.62 | 0.78 | 3.28 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 2.165 | 10.09 | 3.38 | 3.4 | 96.6 | 0.0 | 0.80 | 1.29 | 0.64 | 0.81 | 2.27 | 7338 | 937 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HRA | 0257 | 2024-01-19 | 2018-09-26 | 3.7 | 3.89 | 3.68 | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 9.85 | 0.01 | 2.227 | 6.64 | 0.18 | 7.4 | 92.6 | 0.0 | -5.34 | 0.70 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10818 | 1450 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XoU | 22280 | 2024-01-18 | 2020-07-07 | 4.0 | 4.67 | 4.02 | 4.1 | 0.005 | 1.06 | 0.0 | 0.06 | 13.63 | 0.01 | 2.261 | 4.13 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.89 | 0.75 | — | 4.1 | 0.003 | 0.84 | 0.0 | 0.04 | 14.96 | 0.00 | 2.140 | 12.32 | 1.17 | 2.7 | 97.3 | 0.0 | 1.24 | 1.78 | 0.91 | 0.85 | — | 7697 | 965 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YAE | 10747 | 2024-01-20 | 2020-03-12 | 3.9 | 4.10 | 4.00 | 4.1 | 0.009 | 0.82 | 0.0 | 0.05 | 14.19 | 0.00 | 2.093 | 17.68 | 0.13 | 9.3 | 90.5 | 0.2 | -3.34 | 0.77 | 0.85 | 1.78 | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 16.30 | 0.00 | 2.094 | 12.63 | 2.42 | 4.8 | 95.2 | 0.1 | 0.59 | 1.25 | 0.76 | 0.83 | 1.02 | 13707 | 1717 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoH | 33348 | 2024-01-20 | 2022-05-01 | 3.6 | 3.64 | 3.56 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 12.55 | 0.00 | 2.005 | 32.89 | 4.34 | 10.6 | 89.3 | 0.1 | -4.16 | 0.72 | 0.83 | 2.38 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.87 | 0.00 | 2.119 | 9.55 | 3.56 | 7.0 | 93.0 | 0.0 | -1.53 | 0.54 | 0.73 | 0.83 | 2.39 | 13524 | 1832 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XZQ | 10665 | 2024-01-18 | 2020-02-05 | 3.6 | 4.18 | 3.53 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 15.87 | 0.01 | 1.924 | 5.93 | 1.26 | 5.0 | 95.0 | 0.0 | -2.44 | 0.89 | 0.79 | 1.95 | 3.8 | 0.005 | 0.62 | 0.0 | 0.04 | 16.18 | 0.00 | 1.921 | 10.34 | 1.32 | 6.3 | 93.7 | 0.0 | -0.63 | 0.76 | 0.90 | 0.82 | 1.89 | 56888 | 3492 | 8 | 19 | 0 | 0 | 28480 | logfile |
✔ | 6QM9 | 4592 | 2024-01-19 | 2019-02-01 | 3.6 | 3.72 | 3.65 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 15.52 | 0.01 | 2.275 | 3.74 | 0.00 | 3.2 | 96.8 | 0.0 | -6.09 | 0.74 | 0.84 | 2.64 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.85 | 0.00 | 2.168 | 8.08 | 2.94 | 3.2 | 96.8 | 0.0 | 0.65 | 0.56 | 0.74 | 0.84 | 1.64 | 10878 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BP3 | 30143 | 2024-01-17 | 2020-03-21 | 3.8 | 4.06 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.06 | 16.16 | 0.01 | 2.235 | 6.34 | 0.00 | 7.4 | 92.6 | 0.0 | -4.77 | 0.48 | 0.75 | 0.86 | 4.1 | 0.003 | 0.85 | 0.0 | 0.05 | 18.22 | 0.00 | 2.155 | 15.77 | 3.91 | 6.4 | 93.6 | 0.0 | -0.10 | 1.25 | 0.50 | 0.75 | 0.86 | 6080 | 788 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2J | 20572 | 2024-01-20 | 2019-08-08 | 4.1 | 4.32 | — | 4.1 | 0.006 | 0.98 | 0.0 | 0.06 | 9.00 | 0.01 | 1.677 | 4.24 | 0.13 | 5.0 | 94.8 | 0.1 | -3.22 | 0.52 | 0.28 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 12.13 | 0.00 | 2.192 | 13.35 | 0.00 | 6.3 | 93.7 | 0.0 | -1.78 | 2.42 | 0.69 | 0.61 | — | 13796 | 1738 | 8 | 0 | 22 | 0 | 0 | logfile |