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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W0C | 32238 | 2024-01-20 | 2021-11-18 | 3.93 | 4.02 | — | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 15.71 | 0.00 | 2.105 | 14.31 | 0.07 | 4.2 | 95.8 | 0.1 | -0.14 | 0.86 | 0.73 | 0.17 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 16.98 | 0.00 | 2.140 | 17.13 | 1.71 | 4.9 | 95.1 | 0.1 | -0.10 | 0.42 | 0.86 | 0.74 | 0.07 | 13663 | 1492 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2024-01-19 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.005 | 1.26 | 2.0 | 0.04 | 18.59 | 0.01 | 1.977 | 21.93 | 4.49 | 8.1 | 91.8 | 0.1 | -0.73 | 1.22 | 0.61 | 0.75 | 0.08 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2024-01-17 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.27 | 0.00 | 2.073 | 14.15 | 1.77 | 3.2 | 96.8 | 0.0 | 1.17 | 1.26 | 0.37 | 0.25 | 0.10 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2024-01-19 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 17.57 | 0.00 | 2.172 | 14.38 | 3.17 | 0.5 | 99.5 | 0.0 | 2.16 | 2.03 | 0.60 | 0.87 | 0.10 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SE0 | 10151 | 2024-01-19 | 2019-07-29 | 3.8 | 4.73 | — | 4.6 | 0.009 | 1.01 | 0.0 | 0.06 | 28.08 | 0.01 | 2.248 | 4.43 | 0.00 | 0.9 | 99.1 | 0.0 | -2.82 | 0.80 | 0.78 | 0.85 | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 28.07 | 0.00 | 2.148 | 12.93 | 3.19 | 1.7 | 98.3 | 0.0 | 0.98 | 0.65 | 0.80 | 0.77 | 0.11 | 12002 | 765 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7WU7 | 32823 | 2024-01-20 | 2022-02-07 | 3.85 | 3.66 | 4.04 | 3.8 | 0.005 | 0.81 | 0.0 | 0.05 | 14.10 | 0.00 | 2.146 | 18.27 | 0.01 | 5.3 | 94.7 | 0.1 | -1.14 | 0.70 | 0.65 | 0.47 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 16.60 | 0.00 | 2.070 | 20.17 | 3.30 | 5.9 | 94.1 | 0.0 | -1.22 | 1.15 | 0.70 | 0.68 | 0.11 | 67031 | 8727 | 26 | 0 | 4 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2024-01-17 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.51 | 0.0 | 0.04 | 15.53 | 0.00 | 2.012 | 5.62 | 2.45 | 1.0 | 99.0 | 0.0 | 1.56 | 0.67 | 0.65 | 0.75 | 0.12 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8UoP | 42435 | 2024-01-20 | 2023-10-20 | 3.8 | 3.97 | 3.89 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 16.45 | 0.01 | 1.954 | 17.97 | 0.73 | 15.7 | 83.6 | 0.7 | -3.60 | 0.18 | 0.15 | 0.40 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 17.24 | 0.00 | 1.974 | 15.70 | 4.69 | 13.0 | 86.6 | 0.3 | -3.07 | 0.94 | 0.24 | 0.24 | 0.12 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 7YG1 | 33804 | 2024-01-17 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.79 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.004 | 0.88 | 0.0 | 0.05 | 16.72 | 0.00 | 2.139 | 24.30 | 6.19 | 8.8 | 91.1 | 0.1 | -1.76 | 1.43 | 0.67 | 0.68 | 0.13 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XSS | 22305 | 2024-01-18 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.004 | 0.80 | 0.0 | 0.04 | 16.67 | 0.00 | 2.286 | 17.60 | 1.82 | 0.9 | 99.1 | 0.0 | 2.48 | 1.29 | 0.74 | 0.79 | 0.14 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DGD | 30671 | 2024-01-19 | 2020-11-11 | 3.96 | 4.40 | — | 4.2 | 0.015 | 2.08 | 10.0 | 0.12 | 15.16 | 0.01 | 1.930 | 4.79 | 3.87 | 9.2 | 89.9 | 0.9 | -4.26 | 0.61 | 0.53 | 0.38 | 4.2 | 0.003 | 0.82 | 0.0 | 0.04 | 16.33 | 0.00 | 2.169 | 16.07 | 2.63 | 7.7 | 92.3 | 0.1 | -1.66 | 1.89 | 0.69 | 0.67 | 0.17 | 12381 | 1572 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YLV | 33918 | 2024-01-19 | 2022-07-27 | 3.91 | 4.23 | 4.38 | 4.3 | 0.009 | 0.68 | 0.0 | 0.06 | 10.36 | 0.00 | 2.239 | 1.53 | 0.03 | 2.3 | 97.6 | 0.2 | -0.18 | 0.55 | 0.40 | 0.18 | 4.3 | 0.004 | 1.05 | 1.0 | 0.05 | 15.61 | 0.00 | 2.080 | 25.07 | 2.82 | 3.6 | 96.3 | 0.1 | -0.32 | 2.25 | 0.74 | 0.73 | 0.18 | 65495 | 8564 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2S | 20579 | 2024-01-20 | 2019-08-08 | 3.8 | 4.19 | — | 4.0 | 0.008 | 1.06 | 0.0 | 0.06 | 9.19 | 0.01 | 1.366 | 3.84 | 0.13 | 7.6 | 92.4 | 0.0 | -4.58 | 0.64 | 0.51 | 0.55 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 14.25 | 0.00 | 2.026 | 15.82 | 3.38 | 6.2 | 93.8 | 0.0 | -2.25 | 1.86 | 0.74 | 0.70 | 0.19 | 13726 | 1734 | 10 | 0 | 22 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2024-01-18 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 14.32 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.005 | 1.03 | 0.0 | 0.04 | 15.04 | 0.00 | 2.012 | 21.70 | 0.52 | 2.9 | 97.1 | 0.0 | 0.39 | 1.50 | 0.95 | 0.84 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XUN | 33475 | 2024-01-17 | 2022-05-19 | 3.4 | 3.91 | 3.41 | 3.8 | 0.002 | 0.57 | 0.0 | 0.04 | 13.72 | 0.00 | 2.129 | 11.02 | 0.00 | 4.1 | 95.9 | 0.0 | -0.92 | 0.72 | 0.76 | 0.33 | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 15.88 | 0.00 | 2.137 | 13.82 | 2.77 | 5.2 | 94.8 | 0.0 | -0.25 | 1.11 | 0.73 | 0.78 | 0.26 | 5591 | 741 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8A | 22724 | 2024-01-19 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 15.98 | 0.01 | 2.180 | 17.79 | 5.44 | 5.7 | 94.2 | 0.1 | -0.95 | 0.44 | 0.43 | 0.57 | 0.27 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DGi | 27423 | 2024-01-20 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.89 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 16.48 | 0.00 | 2.047 | 20.88 | 3.53 | 6.9 | 92.9 | 0.2 | -0.43 | 0.55 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-01-18 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 7B6X | 12057 | 2024-01-19 | 2020-12-08 | 3.6 | 2.59 | — | 2.5 | 0.008 | 1.06 | 0.0 | 0.06 | 14.17 | 0.01 | 2.035 | 44.45 | 0.09 | 13.3 | 86.7 | 0.0 | -2.77 | 0.75 | 0.72 | 0.42 | 2.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.22 | 0.00 | 2.128 | 23.11 | 3.60 | 7.2 | 92.8 | 0.0 | -0.88 | 1.36 | 0.75 | 0.71 | 0.28 | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQ4 | 32085 | 2024-01-17 | 2021-10-19 | 3.2 | 3.54 | — | 3.6 | 0.007 | 0.74 | 0.0 | 0.04 | 16.10 | 0.00 | 2.155 | 9.59 | 2.30 | 6.6 | 93.4 | 0.0 | -1.96 | 0.61 | 0.79 | 1.10 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 17.31 | 0.00 | 2.217 | 8.02 | 4.02 | 3.9 | 96.1 | 0.0 | 3.15 | 1.27 | 0.59 | 0.78 | 0.28 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |