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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BDZ | 15995 | 2024-01-17 | 2022-10-20 | 3.13 | 3.37 | 1.52 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 12.41 | 0.00 | 2.264 | 6.23 | 0.00 | 3.0 | 97.0 | 0.0 | 2.26 | 0.48 | 0.84 | 2.77 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.26 | 0.00 | 2.204 | 9.12 | 1.64 | 1.7 | 98.3 | 0.0 | 3.02 | 0.42 | 0.49 | 0.86 | 2.82 | 3309 | 414 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PY2 | 13708 | 2024-01-17 | 2021-10-08 | 2.59 | 2.64 | 1.54 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.007 | 0.93 | 0.0 | 0.05 | 17.99 | 0.00 | 2.349 | 2.69 | 8.50 | 5.2 | 94.8 | 0.0 | -3.95 | 1.39 | 0.49 | 0.88 | 6.22 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL2 | 16942 | 2024-01-17 | 2023-03-30 | 3.0 | 3.17 | 1.54 | 3.3 | 0.004 | 0.45 | 0.0 | 0.05 | 9.08 | 0.00 | 2.275 | 10.00 | 4.35 | 3.4 | 96.6 | 0.0 | -2.34 | 0.48 | 0.91 | 5.22 | 3.3 | 0.007 | 0.72 | 0.0 | 0.06 | 15.45 | 0.00 | 2.361 | 5.65 | 9.13 | 8.6 | 87.9 | 3.4 | -3.19 | 0.46 | 0.43 | 0.90 | 5.94 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNR | 33969 | 2024-01-17 | 2022-07-31 | 2.9 | 2.79 | 1.55 | 3.2 | 0.003 | 0.46 | 0.0 | 0.05 | 10.05 | 0.00 | 2.424 | 7.49 | 0.00 | 1.7 | 98.3 | 0.0 | -3.30 | 0.41 | 0.87 | 6.76 | 3.2 | 0.004 | 0.48 | 0.0 | 0.05 | 12.92 | 0.00 | 2.401 | 4.42 | 0.00 | 4.2 | 95.8 | 0.0 | -1.94 | 0.22 | 0.42 | 0.88 | 6.14 | 2526 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BER | 16009 | 2024-01-17 | 2022-10-21 | 4.0 | 4.97 | 1.55 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 12.68 | 0.00 | 2.214 | 12.92 | 0.00 | 4.0 | 96.0 | 0.0 | 2.47 | 0.55 | 0.79 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 14.36 | 0.00 | 2.165 | 11.56 | 0.82 | 4.5 | 95.5 | 0.0 | 3.15 | 1.18 | 0.54 | 0.81 | — | 3309 | 414 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ACB | 15345 | 2024-01-17 | 2022-07-05 | 2.6 | 2.88 | 1.65 | 2.9 | 0.004 | 0.71 | 0.0 | 0.08 | 13.94 | 0.00 | 2.257 | 7.47 | 0.00 | 7.8 | 92.2 | 0.0 | -0.81 | 0.21 | 0.81 | 4.10 | 2.9 | 0.004 | 0.64 | 0.0 | 0.04 | 17.44 | 0.00 | 2.232 | 6.89 | 1.14 | 10.1 | 89.9 | 0.0 | -0.61 | 1.23 | 0.20 | 0.84 | 3.83 | 1815 | 220 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 7UUR | 26801 | 2024-01-20 | 2022-04-28 | 1.67 | 1.76 | 1.67 | 1.8 | 0.061 | 2.45 | 3.0 | 0.98 | 14.57 | 0.01 | 1.674 | 7.19 | 0.44 | 2.5 | 97.2 | 0.2 | -0.89 | 0.76 | 0.87 | 7.87 | 1.8 | 0.006 | 2.39 | 0.0 | 0.09 | 14.61 | 0.00 | 1.579 | 11.53 | 0.36 | 2.1 | 97.9 | 0.0 | 0.34 | 0.28 | 0.76 | 0.87 | 7.62 | 13683 | 1668 | 12 | 0 | 18 | 603 | 0 | logfile |
✔ | 7Xo3 | 33335 | 2024-01-17 | 2022-04-30 | 2.6 | 2.32 | 1.68 | 2.7 | 0.002 | 0.41 | 0.0 | 0.05 | 12.37 | 0.00 | 2.223 | 4.70 | 0.00 | 8.2 | 91.8 | 0.0 | -3.31 | 0.45 | 0.81 | 5.78 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 16.17 | 0.00 | 2.274 | 2.63 | 3.03 | 11.7 | 88.3 | 0.0 | -1.86 | 0.39 | 0.50 | 0.85 | 5.90 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ESM | 28577 | 2024-01-17 | 2022-10-14 | 3.2 | 3.29 | 1.71 | 3.3 | 0.010 | 0.85 | 0.0 | 0.33 | 14.65 | 0.01 | 2.141 | 9.45 | 0.56 | 10.9 | 89.1 | 0.0 | -2.85 | 0.62 | 0.87 | 3.21 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 16.75 | 0.00 | 2.275 | 7.83 | 2.38 | 8.1 | 91.9 | 0.0 | 1.27 | 0.98 | 0.60 | 0.87 | 2.77 | 6778 | 812 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZN2 | 11309 | 2024-01-19 | 2020-07-06 | 4.3 | 2.35 | 1.71 | 4.5 | 0.004 | 0.93 | 0.0 | 0.04 | 15.06 | 0.01 | 2.001 | 21.27 | 6.35 | 4.3 | 95.7 | 0.0 | -1.42 | 0.74 | 0.77 | — | 4.5 | 0.003 | 0.79 | 0.0 | 0.05 | 14.51 | 0.00 | 2.059 | 20.07 | 0.00 | 5.3 | 94.7 | 0.0 | -1.16 | 1.47 | 0.73 | 0.74 | — | 11320 | 1412 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6MST | 9232 | 2024-01-17 | 2018-10-18 | 2.7 | 2.92 | 1.72 | 2.8 | 0.006 | 0.85 | 0.0 | 0.05 | 7.68 | 0.00 | 2.294 | 1.43 | 0.00 | 1.9 | 98.1 | 0.0 | -4.58 | 0.73 | 0.90 | 7.42 | 2.9 | 0.009 | 0.67 | 0.0 | 0.04 | 15.59 | 0.01 | 2.188 | 6.44 | 0.66 | 3.4 | 96.6 | 0.0 | -3.54 | 1.19 | 0.68 | 0.91 | 7.19 | 5172 | 648 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL3 | 16944 | 2024-01-17 | 2023-03-30 | 3.5 | 3.67 | 1.73 | 4.2 | 0.009 | 0.67 | 0.0 | 0.06 | 9.52 | 0.01 | 2.263 | 7.26 | 0.00 | 0.0 | 100.0 | 0.0 | -0.18 | 0.42 | 0.77 | 3.49 | 4.2 | 0.003 | 0.44 | 0.0 | 0.06 | 16.16 | 0.00 | 2.295 | 12.90 | 2.40 | 7.4 | 92.6 | 0.0 | -0.60 | 0.86 | 0.32 | 0.68 | 4.67 | 4970 | 330 | 10 | 0 | 0 | 0 | 2500 | logfile |
✔ | 7YK8 | 33890 | 2024-01-17 | 2022-07-22 | 2.8 | 2.62 | 1.74 | 2.8 | 0.005 | 0.66 | 0.0 | 0.06 | 11.56 | 0.00 | 2.465 | 18.20 | 0.00 | 8.5 | 91.5 | 0.0 | -3.55 | 0.46 | 0.82 | 1.92 | 2.8 | 0.003 | 0.66 | 0.0 | 0.05 | 16.81 | 0.00 | 2.247 | 7.69 | 7.37 | 8.5 | 91.5 | 0.0 | -2.87 | 1.14 | 0.44 | 0.82 | 1.95 | 3108 | 450 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EFC | 31083 | 2024-01-17 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.55 | 0.01 | 1.768 | 10.33 | 0.54 | 3.8 | 96.2 | 0.0 | 0.14 | 0.88 | 0.80 | 0.85 | 6.64 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7XJX | 33236 | 2024-01-17 | 2022-04-18 | 2.7 | 2.78 | 1.76 | 2.9 | 0.008 | 0.81 | 0.0 | 0.06 | 12.77 | 0.00 | 2.438 | 12.63 | 0.00 | 16.4 | 83.6 | 0.0 | -5.02 | 0.48 | 0.81 | 4.92 | 2.9 | 0.004 | 0.77 | 0.0 | 0.05 | 14.58 | 0.00 | 2.392 | 9.10 | 4.44 | 12.3 | 87.7 | 0.0 | -3.52 | 1.16 | 0.45 | 0.81 | 4.78 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A4L | 15148 | 2024-01-18 | 2022-06-12 | 2.68 | 2.73 | 1.77 | 2.8 | 0.004 | 0.65 | 0.0 | 0.05 | 13.43 | 0.00 | 2.385 | 10.11 | 0.00 | 0.0 | 100.0 | 0.0 | -3.33 | 0.52 | 0.85 | 5.71 | 2.8 | 0.007 | 0.68 | 0.0 | 0.06 | 17.32 | 0.00 | 2.250 | 10.61 | 4.23 | 3.0 | 97.0 | 0.0 | -3.68 | 1.56 | 0.53 | 0.87 | 5.60 | 7755 | 1125 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2024-01-17 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.82 | 0.0 | 0.05 | 16.86 | 0.00 | 2.092 | 17.18 | 6.35 | 9.1 | 90.9 | 0.0 | -4.83 | 1.37 | 0.32 | 0.68 | 4.07 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q98 | 18271 | 2024-01-18 | 2023-08-20 | 1.75 | 1.75 | 1.77 | 1.8 | 0.011 | 1.66 | 0.0 | 0.07 | 9.83 | 0.01 | 2.543 | 0.00 | 0.00 | 0.5 | 99.5 | 0.0 | -0.80 | 0.22 | 0.65 | 8.64 | 1.8 | 0.002 | 0.49 | 0.0 | 0.05 | 13.51 | 0.00 | 2.352 | 2.28 | 0.51 | 0.2 | 99.8 | 0.0 | -0.53 | 1.16 | 0.43 | 0.90 | 8.01 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✘ | 7EFD | 31084 | 2024-01-17 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 8HF7 | 34715 | 2024-01-18 | 2022-11-09 | 3.8 | 4.66 | 1.82 | 4.2 | 0.006 | 1.34 | 2.0 | 0.07 | 14.02 | 0.01 | 2.294 | 7.91 | 0.61 | 5.9 | 93.5 | 0.6 | -3.03 | 0.63 | 0.74 | 0.62 | 4.3 | 0.003 | 0.76 | 0.0 | 0.04 | 16.19 | 0.00 | 2.136 | 16.10 | 2.53 | 6.1 | 93.5 | 0.4 | 0.33 | 0.60 | 0.64 | 0.77 | 0.49 | 8978 | 1126 | 4 | 0 | 26 | 0 | 0 | logfile |