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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SGD | 25107 | 2024-01-18 | 2021-10-05 | 3.97 | 4.40 | 3.79 | 4.1 | 0.024 | 1.80 | 3.0 | 0.17 | 14.55 | 0.01 | 2.477 | 1.47 | 0.00 | 1.8 | 98.2 | 0.0 | 0.20 | 0.84 | 0.81 | 2.57 | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 15.28 | 0.00 | 2.278 | 15.17 | 3.51 | 5.4 | 94.6 | 0.0 | 0.51 | 1.50 | 0.85 | 0.83 | 1.95 | 9120 | 1014 | 39 | 0 | 75 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2024-01-18 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 6Q2N | 20575 | 2024-01-20 | 2019-08-08 | 4.4 | 4.43 | — | 4.3 | 0.008 | 1.24 | 0.0 | 0.06 | 9.78 | 0.01 | 1.449 | 11.01 | 0.68 | 9.6 | 90.2 | 0.2 | -4.25 | 0.60 | 0.56 | — | 4.3 | 0.005 | 0.87 | 0.0 | 0.05 | 11.81 | 0.01 | 1.996 | 22.10 | 0.00 | 12.0 | 88.0 | 0.1 | -2.96 | 0.97 | 0.62 | 0.59 | — | 13140 | 1678 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6oiK | 20079 | 2024-01-20 | 2019-04-09 | 3.6 | 3.73 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 14.96 | 0.01 | 1.986 | 8.48 | 1.04 | 6.4 | 93.6 | 0.0 | -3.68 | 0.70 | 0.78 | 2.74 | 3.6 | 0.003 | 0.74 | 0.0 | 0.05 | 15.61 | 0.00 | 2.086 | 13.60 | 4.50 | 3.5 | 96.5 | 0.0 | -0.75 | 0.55 | 0.70 | 0.82 | 1.87 | 8496 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7FDK | 31546 | 2024-01-17 | 2021-07-16 | 3.69 | 3.82 | — | 3.8 | 0.008 | 0.88 | 0.0 | 0.05 | 15.52 | 0.01 | 2.080 | 18.21 | 0.29 | 13.2 | 86.7 | 0.1 | -4.54 | 0.61 | 0.79 | 1.60 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.151 | 12.96 | 2.03 | 7.5 | 92.4 | 0.1 | -0.82 | 1.23 | 0.60 | 0.76 | 1.33 | 6449 | 791 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6Y92 | 10732 | 2024-01-20 | 2020-03-06 | 4.73 | 5.03 | — | 4.9 | 0.006 | 0.77 | 0.0 | 0.06 | 14.34 | 0.00 | 2.265 | 7.43 | 0.77 | 3.7 | 96.3 | 0.0 | -0.68 | 0.59 | 0.71 | — | 4.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.27 | 0.00 | 2.188 | 10.59 | 0.00 | 5.9 | 94.1 | 0.0 | -1.35 | 0.65 | 0.61 | 0.77 | — | 9497 | 1210 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6GTF | 0064 | 2024-01-19 | 2018-06-18 | 3.63 | 3.94 | — | 3.8 | 0.010 | 1.17 | 0.0 | 0.07 | 16.90 | 0.01 | 2.030 | 10.45 | 0.43 | 15.5 | 84.5 | 0.0 | -5.84 | 0.72 | 0.64 | 1.89 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 18.45 | 0.00 | 2.097 | 18.77 | 3.12 | 9.3 | 90.7 | 0.0 | -3.19 | 1.42 | 0.75 | 0.66 | 1.47 | 10871 | 1280 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7QKi | 14043 | 2024-01-18 | 2021-12-17 | 3.13 | 3.29 | 3.04 | 3.2 | 0.011 | 1.99 | 3.0 | 0.10 | 9.18 | 0.01 | 2.508 | 0.00 | 0.00 | 10.1 | 89.9 | 0.0 | -1.50 | 0.41 | 0.79 | 6.28 | 3.3 | 0.003 | 0.60 | 0.0 | 0.05 | 11.76 | 0.00 | 2.102 | 5.09 | 0.00 | 4.5 | 95.5 | 0.0 | -1.88 | 0.69 | 0.39 | 0.81 | 5.64 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7P5C | 13198 | 2024-01-17 | 2021-07-14 | 3.2 | 3.07 | 3.09 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 14.52 | 0.00 | 2.220 | 7.00 | 0.00 | 2.1 | 97.9 | 0.0 | 2.41 | 0.57 | 0.82 | 2.09 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.64 | 0.00 | 2.241 | 6.03 | 1.83 | 1.7 | 98.3 | 0.0 | 4.16 | 0.31 | 0.52 | 0.80 | 1.36 | 6222 | 784 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2024-01-17 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 22.58 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.006 | 0.87 | 0.0 | 0.06 | 21.38 | 0.00 | 1.993 | 21.68 | 0.00 | 20.9 | 79.1 | 0.0 | -3.27 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7P5M | 13201 | 2024-01-17 | 2021-07-14 | 3.92 | 3.54 | 3.67 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.50 | 0.00 | 2.209 | 8.88 | 0.00 | 0.9 | 99.1 | 0.0 | 3.52 | 0.51 | 0.77 | 1.01 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.15 | 0.00 | 2.185 | 10.33 | 4.28 | 1.2 | 98.8 | 0.0 | 3.94 | 0.45 | 0.53 | 0.78 | 1.01 | 6204 | 788 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2024-01-17 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.004 | 0.85 | 0.0 | 0.05 | 13.91 | 0.01 | 2.194 | 25.38 | 0.28 | 12.3 | 87.7 | 0.0 | -3.36 | 2.74 | 0.57 | 0.69 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P54 | 13194 | 2024-01-17 | 2021-07-14 | 3.3 | 3.29 | 3.21 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 13.94 | 0.00 | 2.206 | 6.98 | 0.00 | 1.7 | 98.3 | 0.0 | 4.08 | 0.53 | 0.76 | 1.07 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 15.77 | 0.00 | 2.193 | 6.82 | 2.73 | 2.2 | 97.8 | 0.0 | 4.65 | 0.39 | 0.54 | 0.78 | 0.87 | 6248 | 794 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6QM5 | 4588 | 2024-01-19 | 2019-02-01 | 3.6 | 3.74 | 3.61 | 3.7 | 0.007 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.311 | 4.02 | 0.00 | 4.1 | 95.9 | 0.0 | -6.65 | 0.70 | 0.85 | 2.84 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.171 | 6.83 | 1.64 | 3.1 | 96.9 | 0.0 | -0.73 | 0.50 | 0.70 | 0.84 | 1.93 | 10874 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8DMi | 27539 | 2024-01-18 | 2022-07-08 | 3.26 | 4.04 | 3.27 | 3.5 | 0.004 | 0.81 | 0.0 | 0.06 | 14.47 | 0.01 | 2.117 | 8.99 | 0.00 | 5.9 | 94.1 | 0.0 | -1.20 | 0.82 | 0.78 | 3.33 | 3.5 | 0.004 | 0.75 | 0.0 | 0.04 | 14.90 | 0.00 | 2.146 | 10.41 | 1.74 | 4.4 | 95.6 | 0.0 | 0.44 | 0.77 | 0.87 | 0.86 | 2.82 | 8259 | 951 | 30 | 0 | 42 | 0 | 0 | logfile |
✔ | 7MXL | 24073 | 2024-01-19 | 2021-05-19 | 3.2 | 3.53 | — | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 13.08 | 0.00 | 2.106 | 11.34 | 0.08 | 5.7 | 94.3 | 0.0 | -1.92 | 0.78 | 0.85 | 3.40 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.88 | 0.00 | 2.105 | 11.99 | 1.72 | 5.6 | 94.4 | 0.1 | -1.34 | 1.09 | 0.78 | 0.86 | 3.08 | 10866 | 1422 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R0C | 14221 | 2024-01-17 | 2022-02-01 | 4.73 | 5.24 | 5.06 | 5.1 | 0.013 | 0.91 | 1.0 | 0.05 | 13.19 | 0.01 | 2.100 | 26.54 | 0.14 | 6.1 | 93.9 | 0.0 | -0.89 | 0.64 | 0.73 | — | 5.1 | 0.002 | 0.64 | 0.0 | 0.04 | 13.18 | 0.01 | 2.206 | 16.40 | 0.00 | 5.2 | 94.8 | 0.0 | -0.29 | 0.51 | 0.64 | 0.72 | — | 6816 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2024-01-18 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DGD | 30671 | 2024-01-19 | 2020-11-11 | 3.96 | 4.40 | — | 4.2 | 0.015 | 2.08 | 10.0 | 0.12 | 15.16 | 0.01 | 1.930 | 4.79 | 3.87 | 9.2 | 89.9 | 0.9 | -4.26 | 0.61 | 0.53 | 0.38 | 4.2 | 0.003 | 0.82 | 0.0 | 0.04 | 16.33 | 0.00 | 2.169 | 16.07 | 2.63 | 7.7 | 92.3 | 0.1 | -1.66 | 1.89 | 0.69 | 0.67 | 0.17 | 12381 | 1572 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V9L | 31824 | 2024-01-18 | 2021-08-26 | 2.6 | 2.13 | — | 1.8 | 0.004 | 0.69 | 0.0 | 0.05 | 13.08 | 0.01 | 2.120 | 3.88 | 0.00 | 3.8 | 96.2 | 0.0 | 0.00 | 0.67 | 0.70 | 3.73 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.47 | 0.00 | 2.163 | 9.00 | 1.84 | 2.3 | 97.7 | 0.0 | 0.86 | 0.46 | 0.77 | 0.79 | 3.02 | 8047 | 1019 | 5 | 0 | 0 | 0 | 0 | logfile |