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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7AGF | 11778 | 2024-01-19 | 2020-09-22 | 3.1 | 3.58 | — | 3.4 | 0.006 | 0.88 | 0.0 | 0.05 | 13.22 | 0.00 | 2.136 | 5.29 | 0.00 | 4.0 | 96.0 | 0.0 | -1.03 | 0.85 | 0.83 | 4.48 | 3.4 | 0.004 | 0.62 | 0.0 | 0.05 | 14.49 | 0.00 | 2.010 | 10.27 | 1.75 | 4.4 | 95.6 | 0.0 | -0.53 | 0.88 | 0.83 | 0.88 | 3.87 | 10071 | 1287 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SGR | 10182 | 2024-01-17 | 2019-08-05 | 3.17 | 3.28 | 3.08 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.56 | 0.00 | 2.201 | 5.15 | 0.00 | 3.2 | 96.8 | 0.0 | -3.06 | 0.69 | 0.83 | 3.52 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.60 | 0.00 | 1.985 | 5.52 | 1.40 | 2.7 | 97.3 | 0.0 | 1.20 | 0.77 | 0.69 | 0.86 | 2.81 | 54142 | 3528 | 8 | 0 | 0 | 0 | 27330 | logfile |
✔ | 7KVF | 23049 | 2024-01-19 | 2020-11-28 | 3.6 | 4.39 | 3.76 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.32 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.82 | 0.66 | 1.37 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 16.23 | 0.01 | 2.129 | 21.92 | 2.37 | 14.7 | 85.3 | 0.0 | -3.73 | 2.39 | 0.87 | 0.77 | 0.95 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TMR | 26000 | 2024-01-18 | 2022-01-19 | 3.5 | 3.65 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 12.90 | 0.00 | 2.124 | 12.17 | 0.12 | 3.3 | 96.7 | 0.0 | 1.40 | 0.75 | 0.79 | 2.12 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.45 | 0.00 | 2.056 | 13.63 | 3.71 | 3.3 | 96.7 | 0.0 | 1.08 | 1.26 | 0.76 | 0.79 | 1.76 | 57795 | 8224 | 32 | 0 | 1 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-01-19 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 8DKM | 27490 | 2024-01-17 | 2022-07-05 | 3.39 | 3.59 | 3.11 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 12.93 | 0.00 | 2.241 | 7.23 | 0.83 | 6.4 | 93.6 | 0.0 | -0.94 | 0.62 | 0.84 | 2.67 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 15.17 | 0.00 | 2.173 | 5.62 | 3.73 | 6.2 | 93.8 | 0.0 | -0.16 | 0.27 | 0.61 | 0.85 | 2.33 | 4383 | 553 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oo8 | 13007 | 2024-01-20 | 2021-05-26 | 3.7 | 2.99 | 3.39 | 3.0 | 0.003 | 0.40 | 0.0 | 0.04 | 9.89 | 0.00 | 2.286 | 6.45 | 0.00 | 1.9 | 98.1 | 0.0 | 2.79 | 0.65 | 0.79 | 2.44 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 14.67 | 0.00 | 2.274 | 10.31 | 2.30 | 1.4 | 98.6 | 0.0 | 2.50 | 0.42 | 0.65 | 0.79 | 2.17 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PMW | 13542 | 2024-01-19 | 2021-09-03 | 4.1 | 4.24 | 4.05 | 4.1 | 0.002 | 0.47 | 1.0 | 0.04 | 9.25 | 0.00 | 2.047 | 8.47 | 0.91 | 2.8 | 97.2 | 0.0 | 0.56 | 0.58 | 0.75 | — | 4.1 | 0.003 | 0.54 | 0.0 | 0.04 | 11.39 | 0.00 | 2.018 | 9.95 | 0.00 | 3.9 | 96.1 | 0.0 | 0.74 | 1.18 | 0.58 | 0.76 | — | 10153 | 643 | 2 | 0 | 0 | 0 | 5123 | logfile |
✔ | 8DQL | 27656 | 2024-01-17 | 2022-07-19 | 3.0 | 2.95 | 2.90 | 2.9 | 0.002 | 0.47 | 0.0 | 0.04 | 14.89 | 0.00 | 2.309 | 5.10 | 0.00 | 3.6 | 96.4 | 0.0 | 2.01 | 0.74 | 0.81 | 1.75 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.65 | 0.00 | 2.302 | 5.25 | 2.74 | 4.5 | 95.5 | 0.0 | 1.70 | 3.33 | 0.75 | 0.84 | 1.98 | 6402 | 771 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D1M | 27135 | 2024-01-20 | 2022-05-27 | 3.11 | 3.41 | 3.10 | 3.4 | 0.006 | 0.87 | 0.0 | 0.06 | 15.34 | 0.00 | 2.396 | 12.79 | 1.18 | 2.7 | 97.1 | 0.3 | 1.27 | 0.63 | 0.86 | 3.50 | 3.4 | 0.003 | 0.49 | 0.0 | 0.04 | 16.67 | 0.00 | 2.255 | 7.60 | 1.77 | 1.9 | 98.1 | 0.0 | 1.40 | 0.91 | 0.62 | 0.88 | 2.41 | 15590 | 1880 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-01-17 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6Y5V | 10704 | 2024-01-20 | 2020-02-25 | 4.08 | 4.18 | 4.07 | 4.2 | 0.004 | 0.68 | 0.0 | 0.05 | 12.75 | 0.00 | 2.232 | 7.39 | 0.29 | 4.0 | 96.0 | 0.0 | -2.25 | 0.65 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13400 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7TYW | 26196 | 2024-01-19 | 2022-02-14 | 3.0 | 2.92 | 2.97 | 3.1 | 0.011 | 0.68 | 1.0 | 0.04 | 13.38 | 0.00 | 2.199 | 5.38 | 1.41 | 1.9 | 98.1 | 0.0 | -4.19 | 0.58 | 0.75 | 2.71 | 3.0 | 0.004 | 0.89 | 1.0 | 0.04 | 15.58 | 0.00 | 2.171 | 8.10 | 3.63 | 2.8 | 97.2 | 0.0 | -0.02 | 0.52 | 0.61 | 0.80 | 2.76 | 9779 | 1256 | 10 | 0 | 7 | 1 | 0 | logfile |
✔ | 7KVE | 23048 | 2024-01-19 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.32 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.45 | 0.00 | 2.169 | 12.44 | 3.18 | 13.0 | 87.0 | 0.0 | -4.00 | 1.20 | 0.75 | 0.74 | 2.08 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DTM | 27705 | 2024-01-19 | 2022-07-26 | 3.5 | 3.58 | 3.45 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.33 | 0.00 | 2.132 | 7.74 | 0.41 | 5.8 | 94.2 | 0.0 | -0.79 | 0.71 | 0.80 | 2.96 | 3.6 | 0.003 | 0.52 | 0.0 | 0.04 | 16.91 | 0.00 | 2.145 | 7.19 | 2.33 | 5.6 | 94.4 | 0.0 | -0.57 | 0.23 | 0.71 | 0.81 | 2.67 | 6498 | 802 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NH9 | 12321 | 2024-01-20 | 2021-02-10 | 3.03 | 3.58 | — | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 14.80 | 0.00 | 2.236 | 12.71 | 3.31 | 11.7 | 88.3 | 0.0 | -2.35 | 0.75 | 0.84 | 2.46 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.267 | 11.60 | 1.03 | 9.2 | 90.8 | 0.0 | 1.15 | 0.50 | 0.75 | 0.85 | 2.31 | 13120 | 1635 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HFC | 34717 | 2024-01-17 | 2022-11-10 | 3.5 | 3.66 | 3.42 | 3.7 | 0.007 | 0.67 | 0.0 | 0.05 | 18.01 | 0.00 | 2.164 | 9.17 | 3.88 | 6.5 | 93.3 | 0.2 | -2.90 | 0.68 | 0.82 | 2.21 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 18.02 | 0.00 | 2.189 | 5.52 | 2.97 | 4.0 | 96.0 | 0.0 | 0.17 | 1.19 | 0.64 | 0.80 | 2.11 | 4007 | 498 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7JYi | 22526 | 2024-01-18 | 2020-08-30 | 3.4 | 3.52 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 16.05 | 0.00 | 2.104 | 14.16 | 5.45 | 10.3 | 89.2 | 0.5 | -4.54 | 0.43 | 0.84 | 2.04 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 16.84 | 0.00 | 2.120 | 8.24 | 4.40 | 8.1 | 91.9 | 0.0 | -1.68 | 0.64 | 0.40 | 0.85 | 2.13 | 8807 | 1152 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK3 | 25171 | 2024-01-20 | 2021-10-19 | 3.8 | 4.06 | — | 4.0 | 0.005 | 0.68 | 0.0 | 0.07 | 13.11 | 0.00 | 2.143 | 5.05 | 0.00 | 5.0 | 95.0 | 0.0 | 0.15 | 0.69 | 0.82 | 2.20 | 4.0 | 0.004 | 0.53 | 0.0 | 0.04 | 13.93 | 0.00 | 2.073 | 8.93 | 1.78 | 6.1 | 93.9 | 0.0 | 0.03 | 0.34 | 0.70 | 0.83 | 1.74 | 13294 | 831 | 7 | 0 | 8 | 0 | 6491 | logfile |
✔ | 8EPX | 28534 | 2024-01-20 | 2022-10-06 | 3.15 | 3.30 | 3.06 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 24.05 | 0.00 | 1.297 | 7.63 | 4.99 | 5.1 | 94.9 | 0.0 | -0.23 | 0.79 | 0.84 | 0.94 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 23.81 | 0.00 | 2.172 | 6.76 | 4.63 | 5.8 | 94.2 | 0.0 | 0.42 | 0.18 | 0.79 | 0.84 | 1.14 | 15457 | 1672 | 14 | 144 | 2 | 0 | 0 | logfile |