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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DST | 27688 | 2024-01-17 | 2022-07-22 | 3.2 | 2.71 | 2.73 | 3.4 | 0.046 | 2.10 | 0.0 | 0.03 | 22.27 | 0.00 | 2.205 | 41.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.44 | 0.57 | — | 2.4 | 0.136 | 9.30 | 191.0 | 0.34 | 28.93 | 0.03 | 1.065 | 133.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.16 | 0.55 | 0.80 | — | 3078 | 0 | 54 | 0 | 270 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2024-01-17 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 26.09 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 23.36 | 0.01 | 1.065 | 31.68 | 0.00 | 8.4 | 91.0 | 0.5 | -1.87 | 2.17 | 0.87 | 0.83 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 7XHA | 33192 | 2024-01-19 | 2022-04-07 | 3.35 | 3.57 | 3.29 | 3.5 | 0.008 | 1.06 | 4.0 | 0.07 | 11.41 | 0.01 | 1.860 | 7.27 | 0.28 | 4.7 | 95.2 | 0.1 | -3.53 | 0.69 | 0.78 | 2.40 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.15 | 0.00 | 1.070 | 8.85 | 1.67 | 4.2 | 95.8 | 0.0 | 0.49 | 1.22 | 0.72 | 0.82 | 2.07 | 10102 | 1270 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 8SEB | 40409 | 2024-01-18 | 2023-04-08 | 3.24 | 3.49 | 3.29 | 3.4 | 0.005 | 0.58 | 0.0 | 0.04 | 12.08 | 0.00 | 2.213 | 7.32 | 1.74 | 4.4 | 95.5 | 0.1 | 0.67 | 0.65 | 0.72 | 1.85 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 14.53 | 0.00 | 1.070 | 9.31 | 2.90 | 4.0 | 95.9 | 0.1 | 0.50 | 0.55 | 0.72 | 0.80 | 2.09 | 9609 | 1223 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RPW | 24624 | 2024-01-19 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.29 | 0.00 | 1.756 | 18.05 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | 4.4 | 0.004 | 0.70 | 0.0 | 0.05 | 18.85 | 0.00 | 1.078 | 20.80 | 0.00 | 12.6 | 87.4 | 0.1 | -3.21 | 3.74 | 0.77 | 0.68 | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✔ | 8TJV | 41312 | 2024-01-18 | 2023-07-24 | 2.99 | 3.53 | 2.99 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 22.96 | 0.00 | 1.526 | 10.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.89 | — | 3.1 | 0.008 | 0.69 | 0.0 | 0.04 | 22.44 | 0.01 | 1.086 | 12.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.92 | 0.92 | — | 8778 | 0 | 2 | 409 | 32 | 0 | 0 | logfile |
✔ | 8SHE | 40485 | 2024-01-20 | 2023-04-13 | 2.8 | 3.49 | 2.89 | 3.2 | 0.005 | 0.56 | 0.0 | 0.04 | 14.08 | 0.00 | 1.875 | 6.81 | 0.00 | 3.6 | 96.4 | 0.0 | 1.64 | 0.86 | 0.89 | 2.88 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.22 | 0.00 | 1.100 | 7.24 | 0.89 | 3.3 | 96.7 | 0.0 | 1.34 | 0.25 | 0.84 | 0.87 | 2.62 | 66179 | 8601 | 49 | 0 | 48 | 19 | 0 | logfile |
✔ | 7ZC6 | 14622 | 2024-01-19 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.30 | 0.01 | 2.098 | 12.11 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.91 | 0.0 | 0.76 | 14.88 | 0.00 | 1.106 | 12.74 | 0.08 | 4.9 | 95.1 | 0.0 | -1.15 | 0.73 | 0.68 | 0.78 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 8oiF | 16891 | 2024-01-17 | 2023-03-22 | 3.5 | 3.41 | 3.30 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 13.83 | 0.01 | 2.246 | 6.05 | 0.00 | 6.8 | 93.2 | 0.0 | -0.42 | 0.75 | 0.81 | 3.19 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 14.22 | 0.00 | 1.109 | 5.82 | 2.32 | 5.3 | 94.7 | 0.0 | -0.04 | 0.85 | 0.75 | 0.81 | 3.06 | 6589 | 934 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8HBH | 34632 | 2024-01-18 | 2022-10-28 | 3.1 | 3.30 | — | 3.3 | 0.008 | 0.84 | 0.0 | 0.05 | 15.29 | 0.01 | 2.007 | 10.23 | 0.90 | 3.2 | 96.8 | 0.0 | -0.10 | 0.68 | 0.78 | 2.79 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.62 | 0.00 | 1.115 | 9.23 | 3.37 | 2.1 | 97.9 | 0.0 | 0.63 | 0.24 | 0.72 | 0.82 | 2.61 | 8502 | 1099 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7N0C | 24103 | 2024-01-17 | 2021-05-25 | 3.4 | 3.71 | — | 3.7 | 0.009 | 1.00 | 0.0 | 0.05 | 15.74 | 0.01 | 2.180 | 6.79 | 0.00 | 1.3 | 98.7 | 0.0 | -3.80 | 0.72 | 0.80 | 2.48 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 16.41 | 0.00 | 1.118 | 9.40 | 3.80 | 5.5 | 94.5 | 0.0 | -1.33 | 1.16 | 0.75 | 0.83 | 1.90 | 6088 | 644 | 6 | 49 | 7 | 1 | 0 | logfile |
✔ | 6KPJ | 0748 | 2024-01-19 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 13.40 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.004 | 0.72 | 1.0 | 0.13 | 14.05 | 0.00 | 1.118 | 6.06 | 0.56 | 3.2 | 96.8 | 0.0 | 1.07 | 0.68 | 0.85 | 0.87 | 3.55 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 8EVU | 28637 | 2024-01-19 | 2022-10-20 | 2.5804 | 3.19 | 2.52 | 2.9 | 0.003 | 0.44 | 0.0 | 0.04 | 10.10 | 0.00 | 2.279 | 2.29 | 0.08 | 1.3 | 98.7 | 0.0 | 1.17 | 0.78 | 0.92 | 4.78 | 2.9 | 0.006 | 0.58 | 0.0 | 0.04 | 13.47 | 0.00 | 1.120 | 4.37 | 0.56 | 2.6 | 97.4 | 0.0 | 1.31 | 0.41 | 0.76 | 0.91 | 4.01 | 11902 | 1540 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Y04 | 33537 | 2024-01-19 | 2022-06-03 | 3.5 | 4.03 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 15.69 | 0.00 | 2.217 | 6.36 | 0.75 | 4.7 | 95.3 | 0.0 | -2.60 | 0.57 | 0.66 | 2.70 | 4.0 | 0.004 | 0.63 | 0.0 | 0.04 | 16.52 | 0.00 | 1.121 | 7.32 | 2.24 | 5.0 | 95.0 | 0.0 | -1.79 | 0.38 | 0.69 | 0.78 | 2.18 | 12050 | 1475 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 8G7T | 29823 | 2024-01-20 | 2023-02-17 | 3.2 | 3.34 | 3.14 | 3.2 | 0.007 | 0.59 | 0.0 | 0.04 | 16.05 | 0.00 | 2.218 | 4.26 | 2.29 | 3.2 | 96.8 | 0.0 | -5.23 | 0.77 | 0.81 | 2.14 | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 16.85 | 0.00 | 1.129 | 8.37 | 3.40 | 7.6 | 92.4 | 0.0 | -1.20 | 3.62 | 0.80 | 0.88 | 2.15 | 14059 | 1619 | 8 | 46 | 4 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2024-01-18 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 17.25 | 0.00 | 1.167 | 8.51 | 0.95 | 1.4 | 98.6 | 0.0 | 1.31 | 1.90 | 0.70 | 0.89 | 3.31 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 8BA9 | 15942 | 2024-01-20 | 2022-10-11 | 3.7 | 3.96 | 3.79 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.68 | 0.01 | 1.191 | 9.39 | 0.10 | 3.9 | 96.1 | 0.0 | -0.84 | 0.83 | 0.84 | 1.69 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.36 | 0.00 | 1.171 | 9.01 | 1.08 | 2.9 | 97.0 | 0.0 | 1.41 | 0.98 | 0.84 | 0.85 | 1.27 | 120442 | 8008 | 35 | 0 | 42 | 0 | 60991 | logfile |
✔ | 7KSo | 23021 | 2024-01-20 | 2020-11-23 | 3.9 | 4.08 | — | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 11.73 | 0.00 | 2.151 | 3.83 | 0.29 | 4.7 | 95.3 | 0.0 | -3.99 | 0.68 | 0.74 | 1.12 | 4.0 | 0.004 | 0.70 | 0.0 | 0.05 | 15.60 | 0.00 | 1.190 | 12.41 | 2.95 | 5.7 | 94.3 | 0.0 | -1.25 | 1.52 | 0.73 | 0.81 | 1.66 | 13075 | 1690 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7FDG | 31542 | 2024-01-17 | 2021-07-16 | 3.69 | 4.43 | — | 4.3 | 0.007 | 0.85 | 0.0 | 0.05 | 16.00 | 0.01 | 2.061 | 23.62 | 0.29 | 7.4 | 92.6 | 0.0 | -3.38 | 0.59 | 0.78 | 1.13 | 4.3 | 0.007 | 1.19 | 0.0 | 0.05 | 17.48 | 0.01 | 1.193 | 24.33 | 3.20 | 4.8 | 95.2 | 0.0 | -0.33 | 0.71 | 0.57 | 0.75 | 1.29 | 6459 | 791 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8G7U | 29824 | 2024-01-20 | 2023-02-17 | 4.0 | 4.17 | 3.95 | 4.0 | 0.009 | 0.95 | 0.0 | 0.06 | 17.04 | 0.01 | 2.056 | 8.67 | 0.61 | 7.2 | 92.8 | 0.0 | -3.99 | 0.78 | 0.75 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 17.83 | 0.00 | 1.194 | 12.08 | 3.81 | 7.4 | 92.6 | 0.0 | -0.97 | 1.03 | 0.78 | 0.75 | — | 14229 | 1634 | 8 | 46 | 4 | 0 | 0 | logfile |