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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7U1E | 26299 | 2023-10-09 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 11.18 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.005 | 0.72 | 0.0 | 0.05 | 11.96 | 0.00 | 2.129 | 15.55 | 0.00 | 6.0 | 94.0 | 0.0 | 0.02 | 0.62 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-10-12 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8C91 | 16498 | 2023-10-04 | 2023-01-21 | 4.19 | 4.74 | 4.70 | 4.2 | 0.001 | 0.36 | 0.0 | 0.03 | 12.73 | 0.00 | 1.896 | 5.51 | 0.07 | 3.8 | 96.1 | 0.2 | 0.39 | 0.84 | 0.79 | — | 4.2 | 0.005 | 0.67 | 0.0 | 0.04 | 16.34 | 0.01 | 1.963 | 29.65 | 0.00 | 9.5 | 90.4 | 0.1 | -2.03 | 0.92 | 0.86 | 0.85 | — | 59110 | 1860 | 18 | 2077 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-10-04 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-10-12 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 6ZGG | 11205 | 2023-10-12 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 11.39 | 0.00 | 2.111 | 11.42 | 0.36 | 5.9 | 94.0 | 0.0 | -0.97 | 1.78 | 0.87 | 0.83 | 1.19 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SQV | 25396 | 2023-10-02 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.30 | 0.00 | 2.295 | 1.36 | 1.67 | 1.1 | 98.9 | 0.0 | 1.71 | 1.99 | 0.77 | 0.90 | 3.84 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-10-05 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D00 | 7782 | 2023-10-18 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 3.91 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | 3.3 | 0.003 | 0.84 | 0.0 | 0.04 | 15.18 | 0.00 | 2.096 | 16.55 | 0.52 | 3.5 | 96.5 | 0.0 | -0.46 | 1.60 | 0.83 | 0.68 | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 5oAF | 3773 | 2023-10-09 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.004 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.119 | 16.11 | 0.00 | 4.4 | 95.5 | 0.1 | -0.37 | 3.72 | 0.73 | 0.73 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7T8C | 25744 | 2023-10-14 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 10.96 | 0.00 | 2.130 | 11.08 | 0.00 | 4.6 | 95.4 | 0.0 | 0.62 | 1.08 | 0.66 | 0.61 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-10-06 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 16.41 | 0.00 | 2.052 | 13.48 | 0.54 | 6.0 | 93.9 | 0.1 | -0.50 | 2.02 | 0.85 | 0.85 | 1.54 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-10-06 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-10-04 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2023-10-18 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.80 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 9.56 | 0.00 | 2.078 | 9.67 | 0.00 | 3.4 | 96.6 | 0.0 | 0.83 | 0.84 | 0.80 | 0.79 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 8FEJ | 29029 | 2023-10-05 | 2022-12-06 | 4.64 | 5.33 | 4.68 | 4.6 | 0.001 | 0.37 | 0.0 | 0.04 | 13.97 | 0.00 | 2.253 | 6.27 | 4.30 | 2.9 | 96.9 | 0.2 | 0.48 | 0.88 | 0.69 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.24 | 0.00 | 2.204 | 9.64 | 0.00 | 6.1 | 93.7 | 0.2 | -0.44 | 1.31 | 0.91 | 0.74 | — | 10464 | 1368 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FEL | 29032 | 2023-10-04 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 12.77 | 0.00 | 2.288 | 10.75 | 0.00 | 3.8 | 96.2 | 0.0 | 0.13 | 1.69 | 0.74 | 0.45 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C96 | 16503 | 2023-10-20 | 2023-01-21 | 4.43 | 5.03 | 4.86 | 4.4 | 0.001 | 0.36 | 0.0 | 0.03 | 13.38 | 0.00 | 1.928 | 6.57 | 0.08 | 3.8 | 96.1 | 0.1 | 0.57 | 0.83 | 0.79 | — | 4.4 | 0.005 | 0.67 | 0.0 | 0.04 | 16.37 | 0.01 | 2.010 | 33.68 | 0.00 | 7.6 | 92.4 | 0.0 | -1.68 | 0.89 | 0.84 | 0.85 | — | 44214 | 1607 | 16 | 1475 | 0 | 0 | 0 | logfile |
✔ | 5ZBo | 6746 | 2023-10-15 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.003 | 0.79 | 1.0 | 0.04 | 13.14 | 0.00 | 2.131 | 20.40 | 0.00 | 5.8 | 94.2 | 0.0 | -2.51 | 2.97 | 0.74 | 0.80 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-10-02 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |