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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oG3 | 20051 | 2023-10-02 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-10-03 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2023-10-04 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.00 | 6.39 | 0.00 | 2.200 | 10.87 | 0.00 | 22.8 | 77.1 | 0.1 | -3.08 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-10-06 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.48 | 0.01 | 1.939 | 74.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.24 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6PCS | 20306 | 2023-10-11 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 12.69 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.007 | 0.75 | 0.0 | 0.04 | 15.06 | 0.01 | 1.975 | 8.66 | 4.45 | 7.4 | 92.4 | 0.2 | -1.65 | 1.27 | 0.67 | 0.89 | 3.56 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2023-10-06 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 18.05 | 0.01 | 1.970 | 24.69 | 1.52 | 12.2 | 86.5 | 1.3 | -3.20 | 1.88 | 0.23 | 0.63 | 0.56 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2023-10-11 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.40 | 0.0 | 0.02 | 12.74 | 0.03 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.005 | 0.73 | 0.0 | 0.04 | 15.45 | 0.01 | 2.001 | 11.36 | 5.26 | 8.9 | 90.9 | 0.2 | -2.15 | 0.50 | 0.63 | 0.83 | 1.97 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-10-06 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-10-03 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.89 | 0.0 | 0.04 | 22.81 | 0.01 | 1.797 | 83.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.81 | 0.96 | 0.88 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6PC5 | 20296 | 2023-10-11 | 2019-06-16 | 2.7 | 3.05 | — | 2.9 | 0.006 | 0.50 | 1.0 | 0.02 | 12.77 | 0.03 | 1.965 | 2.72 | 1.57 | 6.1 | 93.8 | 0.1 | -3.49 | 0.73 | 0.88 | 5.14 | 2.9 | 0.004 | 0.68 | 1.0 | 0.03 | 14.83 | 0.01 | 1.918 | 7.67 | 3.67 | 6.0 | 93.8 | 0.2 | -1.06 | 1.24 | 0.74 | 0.91 | 4.15 | 72206 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCQ | 20304 | 2023-10-11 | 2019-06-18 | 2.6 | 3.06 | — | 2.9 | 0.008 | 0.46 | 0.0 | 0.02 | 12.76 | 0.03 | 1.976 | 3.10 | 1.84 | 6.8 | 93.2 | 0.0 | -4.00 | 0.66 | 0.84 | 4.35 | 2.9 | 0.005 | 0.71 | 0.0 | 0.04 | 14.99 | 0.01 | 2.108 | 9.14 | 3.29 | 7.4 | 92.4 | 0.2 | -1.58 | 1.73 | 0.66 | 0.86 | 4.19 | 72125 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-10-06 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 16.13 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.72 | 0.0 | 0.04 | 18.00 | 0.01 | 1.911 | 21.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.46 | 0.77 | 0.77 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7JSH | 22454 | 2023-10-03 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2023-10-02 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 21.28 | 0.01 | 1.783 | 38.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 7XSL | 33426 | 2023-10-06 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 16.20 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.007 | 0.70 | 0.0 | 0.04 | 18.25 | 0.01 | 1.810 | 33.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.01 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7XSK | 33425 | 2023-10-06 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 15.94 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.006 | 0.67 | 0.0 | 0.04 | 18.57 | 0.01 | 1.759 | 30.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.87 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7YCi | 33740 | 2023-10-04 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 14.96 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.03 | 16.16 | 0.00 | 1.852 | 24.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.95 | 0.90 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 8HD6 | 34670 | 2023-10-04 | 2022-11-03 | 3.73 | 4.52 | 3.73 | 3.2 | 0.002 | 0.54 | 0.0 | 0.02 | 14.51 | 0.00 | 1.969 | 2.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.78 | — | 3.3 | 0.006 | 0.73 | 0.0 | 0.04 | 18.64 | 0.01 | 1.772 | 23.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.31 | 0.91 | 0.82 | — | 8980 | 0 | 1 | 419 | 25 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-10-09 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.006 | 0.93 | 0.0 | 0.04 | 19.63 | 0.01 | 1.935 | 41.01 | 0.91 | 20.6 | 78.2 | 1.3 | -4.93 | 2.35 | 0.80 | 0.66 | 0.49 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7YCH | 33739 | 2023-10-04 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 14.59 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 15.50 | 0.00 | 1.805 | 31.05 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |