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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8Do4 | 27590 | 2023-10-10 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ETU | 28599 | 2023-10-14 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Y6K | 33642 | 2023-10-03 | 2022-06-20 | 3.34 | 3.42 | 3.31 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 14.30 | 0.01 | 2.222 | 15.89 | 0.57 | 4.9 | 95.1 | 0.0 | -1.02 | 0.70 | 0.79 | 2.98 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.43 | 0.00 | 2.136 | 15.17 | 0.57 | 4.9 | 95.1 | 0.0 | -0.73 | 1.83 | 0.70 | 0.81 | 2.79 | 6363 | 834 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RB9 | 24400 | 2023-10-07 | 2021-07-05 | 3.76 | 4.01 | 3.83 | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 14.69 | 0.00 | 2.228 | 9.31 | 0.00 | 3.2 | 96.8 | 0.0 | 0.60 | 0.59 | 0.85 | 1.62 | 3.9 | 0.004 | 0.65 | 0.0 | 0.04 | 16.01 | 0.00 | 1.935 | 9.70 | 0.20 | 5.0 | 95.0 | 0.0 | 0.63 | 2.15 | 0.60 | 0.87 | 2.00 | 14193 | 1786 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ZTC | 14957 | 2023-10-12 | 2022-05-09 | 3.9 | 3.69 | 3.89 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.123 | 5.33 | 0.00 | 6.9 | 93.1 | 0.0 | -2.20 | 0.71 | 0.82 | 3.21 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 15.14 | 0.00 | 2.177 | 7.01 | 0.20 | 4.1 | 95.9 | 0.0 | -0.59 | 2.51 | 0.72 | 0.84 | 2.24 | 25652 | 2920 | 20 | 0 | 548 | 0 | 0 | logfile |
✔ | 8ooF | 17012 | 2023-10-02 | 2023-04-05 | 2.9 | 1.91 | 3.05 | 2.8 | 0.004 | 0.71 | 0.0 | 0.05 | 12.99 | 0.01 | 2.043 | 2.60 | 0.00 | 2.9 | 97.1 | 0.0 | -0.80 | 0.84 | 0.83 | 4.92 | 2.6 | 0.004 | 0.65 | 0.0 | 0.04 | 16.07 | 0.00 | 1.985 | 7.45 | 1.50 | 3.5 | 96.5 | 0.0 | 0.50 | 1.96 | 0.85 | 0.84 | 4.50 | 4479 | 556 | 2 | 0 | 2 | 0 | 0 | logfile |
✘ | 6C1D | 7329 | 2023-10-10 | 2018-01-04 | 3.2 | 3.76 | 3.12 | 3.3 | 0.010 | 1.22 | 4.0 | 0.08 | 11.48 | 0.01 | 1.605 | 9.68 | 1.06 | 8.2 | 91.8 | 0.0 | -4.37 | 0.63 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21049 | 2758 | 14 | 0 | 13 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2023-10-18 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.86 | 0.0 | 0.05 | 16.26 | 0.00 | 2.029 | 15.55 | 0.92 | 11.4 | 87.1 | 1.5 | -1.87 | 1.43 | 0.61 | 0.82 | 2.61 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YV8 | 34120 | 2023-10-04 | 2022-08-18 | 2.94 | 2.33 | 2.97 | 2.1 | 0.005 | 0.65 | 0.0 | 0.04 | 13.91 | 0.00 | 2.006 | 3.85 | 0.15 | 6.1 | 93.9 | 0.0 | -0.89 | 0.78 | 0.82 | 4.02 | 2.1 | 0.003 | 0.63 | 0.0 | 0.04 | 16.27 | 0.00 | 2.061 | 5.66 | 0.44 | 5.4 | 94.6 | 0.0 | 0.71 | 0.33 | 0.80 | 0.84 | 3.13 | 6513 | 793 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8ELJ | 28228 | 2023-10-14 | 2022-09-24 | 3.6 | 4.25 | — | 3.9 | 0.010 | 1.78 | 51.0 | 0.12 | 13.38 | 0.01 | 1.083 | 10.89 | 1.03 | 4.8 | 95.1 | 0.1 | -0.94 | 0.86 | 0.86 | 2.03 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 14.49 | 0.00 | 2.202 | 8.39 | 0.09 | 4.1 | 95.9 | 0.0 | 0.28 | 1.24 | 0.86 | 0.86 | 1.85 | 29463 | 3690 | 24 | 0 | 54 | 0 | 0 | logfile |
✔ | 6RiQ | 4897 | 2023-10-15 | 2019-04-24 | 3.1 | 3.19 | — | 3.3 | 0.006 | 1.00 | 0.0 | 0.05 | 14.77 | 0.00 | 2.001 | 7.14 | 0.00 | 5.2 | 94.8 | 0.0 | -4.36 | 0.63 | 0.78 | 2.59 | 3.3 | 0.005 | 0.67 | 0.0 | 0.05 | 16.56 | 0.00 | 1.912 | 10.66 | 0.82 | 4.9 | 95.1 | 0.0 | -1.22 | 1.95 | 0.64 | 0.82 | 2.53 | 30327 | 3971 | 33 | 0 | 22 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2023-10-08 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 12.36 | 0.00 | 2.317 | 11.19 | 0.12 | 0.3 | 99.7 | 0.0 | -0.42 | 1.65 | 0.69 | 0.88 | 0.65 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ETS | 28597 | 2023-10-14 | 2022-10-17 | 3.04 | 2.39 | 3.30 | 2.1 | 0.004 | 0.83 | 0.0 | 0.05 | 17.56 | 0.01 | 1.956 | 3.86 | 0.03 | 3.1 | 96.9 | 0.0 | -1.71 | 0.72 | 0.78 | 1.98 | 2.1 | 0.004 | 0.67 | 0.0 | 0.04 | 17.67 | 0.00 | 2.011 | 8.84 | 0.73 | 3.4 | 96.6 | 0.0 | 0.14 | 0.61 | 0.82 | 0.84 | 2.40 | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ZTD | 14958 | 2023-10-12 | 2022-05-09 | 4.6 | 4.11 | 4.55 | 4.3 | 0.007 | 1.04 | 0.0 | 0.06 | 15.69 | 0.01 | 2.097 | 8.15 | 0.00 | 5.4 | 94.6 | 0.0 | -2.32 | 0.70 | 0.80 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.92 | 0.00 | 2.049 | 9.84 | 0.00 | 4.9 | 95.1 | 0.0 | 0.37 | 10.50 | 0.68 | 0.78 | — | 25740 | 2928 | 20 | 0 | 548 | 0 | 0 | logfile |
✔ | 8GRY | 34217 | 2023-10-04 | 2022-09-03 | 3.29 | 2.52 | 3.34 | 2.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.11 | 0.00 | 2.001 | 6.11 | 0.14 | 4.7 | 95.3 | 0.0 | 0.44 | 0.75 | 0.76 | 2.64 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 17.54 | 0.00 | 2.042 | 7.07 | 0.29 | 4.4 | 95.6 | 0.0 | 0.82 | 1.38 | 0.77 | 0.80 | 2.62 | 6444 | 792 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2023-10-02 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DoK | 27596 | 2023-10-12 | 2022-07-13 | 3.2 | 3.37 | 3.24 | 3.4 | 0.006 | 0.92 | 7.0 | 0.07 | 13.17 | 0.01 | 2.136 | 12.34 | 0.71 | 3.8 | 96.1 | 0.2 | -0.58 | 0.65 | 0.83 | 3.01 | 3.4 | 0.005 | 0.66 | 0.0 | 0.05 | 15.09 | 0.00 | 2.087 | 10.39 | 0.64 | 4.2 | 95.8 | 0.0 | -0.64 | 0.90 | 0.65 | 0.85 | 2.66 | 25844 | 3091 | 46 | 0 | 122 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-10-05 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UXF | 26860 | 2023-10-08 | 2022-05-05 | 2.7 | 2.95 | 2.73 | 3.0 | 0.008 | 0.81 | 1.0 | 0.05 | 14.77 | 0.01 | 1.983 | 6.62 | 1.71 | 1.9 | 98.1 | 0.0 | 0.24 | 0.66 | 0.86 | 4.48 | 3.0 | 0.002 | 0.56 | 0.0 | 0.04 | 16.19 | 0.00 | 1.972 | 6.10 | 1.01 | 2.3 | 97.7 | 0.0 | 0.78 | 0.38 | 0.62 | 0.85 | 4.11 | 17556 | 2220 | 18 | 0 | 12 | 60 | 0 | logfile |
✔ | 8EU3 | 28603 | 2023-10-07 | 2022-10-18 | 3.62 | 3.87 | 3.65 | 3.9 | 0.014 | 1.04 | 0.0 | 0.09 | 15.17 | 0.01 | 2.211 | 7.13 | 0.19 | 4.0 | 96.0 | 0.0 | -3.46 | 0.64 | 0.79 | 1.57 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.44 | 0.00 | 2.134 | 10.20 | 0.19 | 3.6 | 96.4 | 0.0 | 0.94 | 1.22 | 0.66 | 0.79 | 1.14 | 14596 | 1770 | 8 | 0 | 7 | 0 | 0 | logfile |