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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WL0 | 21814 | 2023-10-05 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.04 | 14.65 | 0.00 | 2.062 | 21.77 | 0.18 | 0.1 | 99.9 | 0.0 | 0.14 | 1.67 | 0.79 | 0.86 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL1 | 21815 | 2023-10-07 | 2020-04-17 | 4.0 | 4.02 | — | 4.0 | 0.007 | 0.81 | 0.0 | 0.05 | 7.85 | 0.00 | 2.413 | 3.17 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.71 | 0.85 | — | 4.0 | 0.004 | 0.51 | 0.0 | 0.04 | 16.18 | 0.00 | 2.241 | 6.67 | 0.67 | 0.0 | 100.0 | 0.0 | 6.23 | 0.72 | 0.72 | 0.86 | — | 14612 | 1872 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2023-10-05 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CKW | 16704 | 2023-10-07 | 2023-02-16 | 3.12 | 3.53 | 3.07 | 3.4 | 0.005 | 0.87 | 0.0 | 0.08 | 12.55 | 0.01 | 0.523 | 4.81 | 0.00 | 0.0 | 100.0 | 0.0 | -0.70 | 0.57 | 0.82 | 3.51 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.24 | 0.00 | 2.211 | 11.20 | 0.27 | 1.1 | 98.9 | 0.0 | 1.42 | 1.20 | 0.58 | 0.85 | 1.95 | 13890 | 1785 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3Q | 15833 | 2023-10-12 | 2022-09-16 | 2.58 | 3.69 | 2.62 | 3.2 | 0.011 | 1.55 | 0.0 | 0.09 | 14.85 | 0.01 | 2.348 | 13.83 | 0.20 | 0.0 | 100.0 | 0.0 | -1.09 | 0.83 | 0.94 | 3.67 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 17.28 | 0.00 | 2.211 | 5.54 | 2.39 | 0.2 | 99.8 | 0.0 | 6.19 | 2.57 | 0.78 | 0.88 | -0.07 | 25095 | 3395 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL8 | 21817 | 2023-10-11 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 14.66 | 0.00 | 2.189 | 14.23 | 0.00 | 0.4 | 99.6 | 0.0 | 3.52 | 1.84 | 0.74 | 0.86 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YC8 | 33736 | 2023-10-03 | 2022-07-01 | 4.14 | 7.25 | 4.31 | 4.1 | 0.002 | 0.51 | 0.0 | 0.02 | 16.48 | 0.00 | 2.079 | 18.05 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.96 | 0.87 | — | 4.1 | 0.006 | 0.80 | 0.0 | 0.04 | 21.93 | 0.01 | 1.981 | 67.90 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.23 | 0.97 | 0.89 | — | 8335 | 0 | 1 | 388 | 1 | 0 | 0 | logfile |
✔ | 7T6E | 25714 | 2023-10-02 | 2021-12-13 | 3.1 | 3.11 | — | 3.1 | 0.129 | 5.90 | 125.0 | 0.23 | 23.20 | 0.02 | 2.041 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.87 | — | 3.1 | 0.122 | 5.61 | 134.0 | 0.36 | 21.80 | 0.02 | 2.082 | 31.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.66 | 0.90 | — | 3480 | 0 | 60 | 0 | 300 | 0 | 0 | logfile |
✔ | 7JSV | 22460 | 2023-10-10 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.020 | 2.10 | 0.0 | 0.10 | 13.46 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 16.05 | 0.00 | 2.148 | 12.36 | 0.19 | 1.0 | 99.0 | 0.0 | -0.77 | 0.91 | 0.64 | 0.83 | 2.60 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-10-04 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BFB | 16019 | 2023-10-02 | 2022-10-24 | 3.2 | 3.13 | 3.01 | 3.2 | 0.003 | 0.44 | 0.0 | 0.06 | 13.91 | 0.00 | 2.552 | 9.16 | 0.00 | 0.0 | 100.0 | 0.0 | -3.20 | 0.49 | 0.83 | 5.20 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 17.53 | 0.00 | 2.364 | 6.10 | 0.00 | 2.8 | 97.2 | 0.0 | -3.12 | 1.03 | 0.52 | 0.86 | 7.13 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2023-10-02 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.077 | 6.38 | 29.0 | 0.43 | 20.27 | 0.05 | 1.653 | 309.17 | 6.67 | 46.7 | 8.0 | 45.3 | -10.71 | 2.72 | 0.41 | 0.54 | 3.39 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2023-10-03 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.208 | 12.61 | 6.92 | 0.8 | 99.2 | 0.0 | -4.23 | 0.65 | 0.62 | 0.88 | 4.75 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-10-06 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2023-10-08 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.22 | 0.0 | 0.05 | 17.69 | 0.00 | 2.013 | 28.27 | 0.53 | 1.4 | 98.6 | 0.0 | -0.68 | 3.70 | 0.67 | 0.84 | 0.35 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZXo | 15012 | 2023-10-08 | 2022-05-21 | 2.5 | 2.89 | 2.54 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.01 | 2.216 | 2.71 | 1.36 | 0.0 | 100.0 | 0.0 | 4.19 | 0.72 | 0.88 | 3.47 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 15.90 | 0.00 | 2.186 | 3.88 | 1.73 | 0.6 | 99.4 | 0.0 | 4.29 | 0.62 | 0.65 | 0.92 | 3.20 | 17016 | 2124 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL1 | 16709 | 2023-10-08 | 2023-02-16 | 3.35 | 3.67 | 2.87 | 3.6 | 0.008 | 0.93 | 0.0 | 0.06 | 12.18 | 0.01 | 0.393 | 14.11 | 0.54 | 0.0 | 99.1 | 0.9 | -1.05 | 0.61 | 0.75 | 3.54 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.11 | 0.01 | 2.263 | 10.87 | 0.18 | 1.8 | 97.7 | 0.5 | 2.09 | 0.67 | 0.64 | 0.77 | 3.02 | 10494 | 1362 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PM3 | 13511 | 2023-10-04 | 2021-09-01 | 3.1 | 3.07 | 3.12 | 3.1 | 0.025 | 2.31 | 0.0 | 0.07 | 17.19 | 0.01 | 2.019 | 5.42 | 0.00 | 0.0 | 100.0 | 0.0 | -0.98 | 0.85 | 0.82 | 3.08 | 3.1 | 0.003 | 1.25 | 0.0 | 0.04 | 16.77 | 0.00 | 2.048 | 9.49 | 0.11 | 1.9 | 98.1 | 0.0 | 1.15 | 1.72 | 0.87 | 0.86 | 2.30 | 8940 | 1113 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2023-10-12 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.90 | 0.00 | 1.877 | 10.11 | 0.21 | 8.1 | 91.9 | 0.0 | -1.12 | 1.52 | 0.66 | 0.79 | 2.07 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6oG3 | 20051 | 2023-10-02 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |