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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R7N | 24299 | 2023-10-02 | 2021-06-25 | 3.95 | 4.08 | 3.93 | 4.1 | 0.010 | 1.24 | 0.0 | 0.07 | 9.48 | 0.00 | 2.553 | 0.78 | 0.45 | 3.2 | 96.8 | 0.0 | 0.00 | 0.81 | 0.77 | 3.23 | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 2.255 | 8.72 | 0.45 | 5.6 | 94.4 | 0.0 | -1.27 | 1.32 | 0.83 | 0.80 | 2.47 | 2790 | 391 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6ZQi | 11364 | 2023-10-03 | 2020-07-09 | 3.8 | 4.13 | 3.63 | 4.1 | 0.002 | 0.56 | 0.0 | 0.04 | 12.41 | 0.00 | 2.336 | 6.03 | 1.12 | 3.1 | 96.9 | 0.0 | -2.14 | 0.67 | 0.78 | 0.85 | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 15.75 | 0.00 | 2.169 | 10.96 | 0.37 | 5.7 | 94.3 | 0.0 | -0.46 | 0.72 | 0.67 | 0.80 | 1.24 | 5032 | 655 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NLL | 12465 | 2023-10-03 | 2021-02-22 | 2.89 | 3.42 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.26 | 10.85 | 0.00 | 2.255 | 7.02 | 0.00 | 0.6 | 99.4 | 0.0 | 1.34 | 0.80 | 0.82 | 3.17 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.220 | 8.36 | 3.07 | 2.3 | 97.5 | 0.2 | -0.33 | 1.58 | 0.82 | 0.87 | 3.19 | 5056 | 656 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ZZ4 | 15034 | 2023-10-02 | 2022-05-25 | 2.63 | 3.04 | 2.56 | 2.2 | 0.008 | 1.05 | 0.0 | 0.05 | 17.04 | 0.00 | 2.035 | 5.21 | 0.27 | 3.3 | 96.7 | 0.0 | -0.79 | 0.86 | 0.84 | 4.14 | 2.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.07 | 0.00 | 1.948 | 10.15 | 1.59 | 3.7 | 96.3 | 0.0 | 0.70 | 0.28 | 0.87 | 0.85 | 3.99 | 3682 | 463 | 1 | 0 | 3 | 11 | 0 | logfile |
✔ | 7RYC | 24733 | 2023-10-04 | 2021-08-24 | 2.9 | 2.34 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 13.76 | 0.00 | 2.198 | 5.49 | 0.38 | 4.9 | 95.1 | 0.0 | -2.98 | 0.80 | 0.77 | 2.64 | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 15.68 | 0.00 | 2.224 | 3.93 | 1.62 | 2.3 | 97.7 | 0.0 | 0.16 | 0.48 | 0.82 | 0.81 | 2.24 | 8277 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DC2 | 27320 | 2023-10-03 | 2022-06-15 | 2.99 | 2.48 | 3.03 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.64 | 0.00 | 2.216 | 11.65 | 0.16 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.83 | 2.49 | 3.0 | 0.005 | 0.71 | 0.0 | 0.04 | 19.50 | 0.00 | 2.095 | 13.77 | 2.74 | 4.8 | 95.2 | 0.0 | 0.52 | 0.40 | 0.84 | 0.85 | 3.05 | 7296 | 673 | 4 | 87 | 0 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2023-10-07 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.65 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 18.33 | 0.00 | 1.996 | 6.19 | 0.00 | 3.6 | 96.4 | 0.0 | 1.12 | 0.35 | 0.83 | 0.84 | 2.01 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 7VVM | 32144 | 2023-10-04 | 2021-11-06 | 3.2 | 2.40 | 3.19 | 3.2 | 0.015 | 1.76 | 0.0 | 0.09 | 13.51 | 0.00 | 2.200 | 6.43 | 0.60 | 5.2 | 94.8 | 0.0 | -1.17 | 0.60 | 0.71 | 2.55 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.16 | 0.00 | 2.118 | 9.89 | 0.84 | 3.6 | 96.4 | 0.0 | 0.53 | 0.62 | 0.66 | 0.73 | 2.33 | 8507 | 1133 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W5C | 21541 | 2023-10-05 | 2020-03-13 | 2.9 | 2.92 | — | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 16.12 | 0.00 | 2.103 | 8.53 | 0.85 | 7.4 | 92.4 | 0.2 | -1.44 | 0.84 | 0.82 | 4.35 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 18.00 | 0.00 | 2.099 | 10.51 | 1.45 | 7.0 | 93.0 | 0.0 | -0.09 | 2.18 | 0.83 | 0.82 | 3.41 | 10183 | 1023 | 5 | 105 | 0 | 0 | 0 | logfile |
✔ | 7SF8 | 25077 | 2023-10-03 | 2021-10-03 | 2.7 | 2.25 | — | 2.1 | 0.005 | 0.74 | 0.0 | 0.05 | 13.03 | 0.00 | 2.270 | 4.24 | 0.14 | 4.7 | 95.3 | 0.0 | 0.40 | 0.80 | 0.80 | 3.25 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 15.86 | 0.00 | 2.153 | 4.39 | 2.09 | 4.5 | 95.5 | 0.0 | 0.95 | 1.00 | 0.82 | 0.84 | 3.40 | 6661 | 860 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HHL | 34803 | 2023-10-03 | 2022-11-16 | 2.87 | 3.25 | 2.89 | 3.1 | 0.004 | 0.50 | 0.0 | 0.04 | 19.77 | 0.00 | 2.126 | 6.49 | 2.29 | 1.4 | 98.6 | 0.0 | 2.28 | 0.77 | 0.81 | 3.37 | 3.1 | 0.003 | 0.53 | 0.0 | 0.03 | 20.68 | 0.00 | 1.967 | 7.34 | 2.50 | 0.7 | 99.3 | 0.0 | 3.11 | 2.37 | 0.81 | 0.84 | 3.59 | 6971 | 592 | 6 | 111 | 4 | 0 | 0 | logfile |
✘ | 6GDG | 4390 | 2023-10-03 | 2018-04-23 | 4.11 | 3.92 | — | 4.0 | 0.008 | 1.10 | 0.0 | 0.06 | 12.81 | 0.00 | 2.449 | 0.87 | 2.07 | 4.9 | 94.6 | 0.5 | -3.15 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7223 | 997 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CXR | 30495 | 2023-10-03 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 18.18 | 0.00 | 2.283 | 11.73 | 0.00 | 4.1 | 95.9 | 0.0 | 1.92 | 1.57 | 0.59 | 0.62 | 1.16 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q6Z | 13860 | 2023-10-04 | 2021-11-09 | 3.59 | 3.59 | 3.63 | 3.6 | 0.008 | 0.69 | 0.0 | 0.04 | 14.66 | 0.00 | 1.945 | 7.30 | 0.00 | 4.8 | 95.2 | 0.0 | 1.64 | 0.56 | 0.72 | 2.00 | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.38 | 0.00 | 1.978 | 8.11 | 0.39 | 4.2 | 95.8 | 0.0 | 1.87 | 0.41 | 0.56 | 0.71 | 1.68 | 9754 | 597 | 3 | 0 | 4 | 0 | 4784 | logfile |
✔ | 7F6G | 31479 | 2023-10-04 | 2021-06-25 | 2.9 | 3.07 | — | 3.0 | 0.009 | 0.98 | 0.0 | 0.08 | 13.58 | 0.00 | 2.197 | 4.74 | 0.65 | 3.0 | 97.0 | 0.0 | -0.57 | 0.67 | 0.78 | 2.90 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.23 | 0.00 | 2.076 | 6.05 | 1.83 | 3.3 | 96.7 | 0.0 | 0.78 | 1.10 | 0.64 | 0.80 | 2.38 | 8697 | 1061 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6XQo | 22291 | 2023-10-02 | 2020-07-09 | 3.1 | 3.54 | — | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.61 | 0.00 | 1.956 | 9.56 | 3.52 | 4.4 | 95.6 | 0.0 | -2.83 | 0.76 | 0.75 | 2.70 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 16.64 | 0.00 | 2.162 | 11.50 | 0.70 | 2.6 | 97.4 | 0.0 | 0.54 | 1.26 | 0.78 | 0.78 | 1.48 | 4301 | 560 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7X1R | 32947 | 2023-10-03 | 2022-02-24 | 3.9 | 3.98 | — | 3.9 | 0.007 | 0.75 | 0.0 | 0.05 | 14.08 | 0.00 | 2.205 | 9.01 | 0.25 | 2.3 | 97.7 | 0.0 | -0.91 | 0.74 | 0.82 | 1.82 | 4.0 | 0.004 | 0.66 | 0.0 | 0.05 | 16.50 | 0.00 | 2.266 | 11.91 | 0.63 | 3.3 | 96.7 | 0.0 | 0.39 | 1.77 | 0.74 | 0.82 | 1.48 | 7608 | 970 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7MK2 | 23884 | 2023-10-03 | 2021-04-21 | 3.8 | 3.60 | 3.84 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.23 | 0.00 | 2.228 | 8.87 | 0.00 | 7.7 | 92.3 | 0.0 | -1.60 | 0.63 | 0.77 | 0.81 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 15.99 | 0.00 | 2.276 | 8.50 | 0.35 | 4.4 | 95.6 | 0.0 | -0.78 | 2.00 | 0.62 | 0.76 | 0.77 | 5333 | 708 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KLC | 0706 | 2023-10-05 | 2019-07-30 | 3.9 | 3.97 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.24 | 0.00 | 2.198 | 10.92 | 0.64 | 9.3 | 90.5 | 0.2 | -3.27 | 0.73 | 0.77 | 1.53 | 3.9 | 0.003 | 0.82 | 0.0 | 0.04 | 16.07 | 0.00 | 2.146 | 11.78 | 0.08 | 8.9 | 91.1 | 0.1 | -0.49 | 2.05 | 0.74 | 0.77 | 0.95 | 11210 | 1436 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2023-10-04 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.89 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.10 | 0.00 | 2.137 | 11.18 | 0.11 | 3.0 | 97.0 | 0.0 | 1.12 | 0.84 | 0.88 | 0.76 | 0.33 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |