The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GEN | 4396 | 2023-10-20 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.75 | 0.0 | 0.04 | 21.07 | 0.00 | 1.034 | 16.07 | 0.30 | 4.6 | 95.4 | 0.0 | -0.33 | 1.23 | 0.84 | 0.73 | -0.01 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 7UiC | 26543 | 2023-10-08 | 2022-03-29 | 3.7 | 6.93 | 3.66 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 13.62 | 0.00 | 2.212 | 9.81 | 0.00 | 1.0 | 99.0 | 0.0 | 0.41 | 0.74 | 0.59 | 0.28 | 3.3 | 0.002 | 0.68 | 0.0 | 0.04 | 15.13 | 0.00 | 2.104 | 15.60 | 0.15 | 2.4 | 97.5 | 0.0 | 0.58 | 0.65 | 0.81 | 0.72 | 0.01 | 17303 | 2138 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YG1 | 33804 | 2023-10-03 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.79 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.004 | 0.93 | 0.0 | 0.05 | 16.74 | 0.00 | 2.054 | 28.13 | 0.74 | 9.6 | 90.3 | 0.1 | -2.02 | 1.47 | 0.68 | 0.69 | 0.01 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA2 | 8651 | 2023-10-08 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.18 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.98 | 0.0 | 0.05 | 16.04 | 0.00 | 2.082 | 26.45 | 0.70 | 5.3 | 94.3 | 0.4 | -1.34 | 2.67 | 0.67 | 0.83 | 0.03 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2023-10-13 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.005 | 0.92 | 0.0 | 0.05 | 16.96 | 0.01 | 2.008 | 39.34 | 0.37 | 7.5 | 92.4 | 0.1 | -1.36 | 1.42 | 0.87 | 0.65 | 0.03 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2023-10-07 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.06 | 10.78 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.006 | 0.93 | 0.0 | 0.05 | 16.08 | 0.01 | 2.004 | 29.78 | 0.75 | 9.0 | 91.0 | 0.0 | -2.59 | 2.15 | 0.72 | 0.74 | 0.04 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2023-10-11 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.36 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.39 | 0.00 | 1.957 | 17.27 | 0.24 | 7.0 | 93.0 | 0.0 | -0.87 | 1.45 | 0.91 | 0.74 | 0.04 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2023-10-04 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.04 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.00 | 1.804 | 27.04 | 0.65 | 11.2 | 88.7 | 0.1 | -2.54 | 1.68 | 0.89 | 0.77 | 0.05 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 7B6X | 12057 | 2023-10-05 | 2020-12-08 | 3.6 | 2.59 | — | 2.5 | 0.008 | 1.06 | 0.0 | 0.06 | 14.17 | 0.01 | 2.035 | 44.45 | 0.09 | 13.3 | 86.7 | 0.0 | -2.77 | 0.75 | 0.72 | 0.42 | 2.5 | 0.003 | 0.74 | 0.0 | 0.04 | 16.14 | 0.00 | 2.135 | 23.78 | 0.34 | 7.5 | 92.4 | 0.1 | -1.21 | 1.36 | 0.75 | 0.71 | 0.06 | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2023-10-25 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.34 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.004 | 0.98 | 0.0 | 0.05 | 18.80 | 0.01 | 1.829 | 40.64 | 0.54 | 9.8 | 89.5 | 0.6 | -2.79 | 2.44 | 0.68 | 0.44 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 8P2M | 17370 | 2023-10-20 | 2023-05-16 | 3.82 | 5.95 | 4.51 | 4.2 | 0.012 | 1.85 | 111.0 | 0.14 | 13.83 | 0.01 | 2.190 | 2.42 | 1.90 | 4.5 | 95.5 | 0.0 | -1.71 | 0.87 | 0.76 | -0.22 | 4.2 | 0.003 | 0.79 | 0.0 | 0.04 | 15.13 | 0.00 | 2.104 | 19.99 | 0.14 | 3.7 | 96.2 | 0.0 | 1.33 | 0.84 | 0.88 | 0.76 | 0.07 | 46702 | 5819 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-10-10 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.62 | 0.01 | 1.977 | 24.30 | 0.53 | 9.4 | 90.1 | 0.4 | -2.72 | 1.99 | 0.33 | 0.25 | 0.07 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-10-08 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-10-09 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3P | 15832 | 2023-10-08 | 2022-09-16 | 2.81 | 3.73 | 2.92 | 3.3 | 0.008 | 1.53 | 30.0 | 0.10 | 16.99 | 0.00 | 2.469 | 4.32 | 0.78 | 0.0 | 100.0 | 0.0 | -0.91 | 0.82 | 0.93 | 1.32 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 18.16 | 0.00 | 2.171 | 4.79 | 2.13 | 0.0 | 100.0 | 0.0 | 5.63 | 1.33 | 0.79 | 0.89 | 0.09 | 17620 | 2370 | 55 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DPA | 30802 | 2023-10-16 | 2020-12-18 | 3.8 | 4.83 | 3.79 | 3.0 | 0.006 | 0.84 | 0.0 | 0.05 | 15.30 | 0.01 | 2.038 | 22.25 | 0.00 | 12.3 | 87.7 | 0.0 | -3.05 | 0.70 | 0.39 | 0.50 | 3.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.94 | 0.00 | 2.083 | 18.81 | 0.11 | 8.1 | 91.9 | 0.0 | -1.30 | 1.14 | 0.89 | 0.78 | 0.09 | 32858 | 4034 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J5P | 5778 | 2023-10-09 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.06 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.4 | 0.004 | 0.91 | 0.0 | 0.04 | 16.97 | 0.00 | 2.085 | 17.32 | 0.41 | 5.3 | 94.6 | 0.1 | 0.51 | 2.09 | 0.74 | 0.79 | 0.11 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2023-10-08 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.12 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.003 | 0.81 | 0.0 | 0.04 | 16.42 | 0.00 | 2.097 | 15.49 | 0.35 | 8.6 | 91.1 | 0.3 | -0.38 | 1.64 | 0.47 | 0.44 | 0.13 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2023-10-05 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.93 | 0.0 | 0.05 | 18.31 | 0.00 | 2.178 | 17.84 | 0.76 | 8.1 | 91.9 | 0.0 | -0.42 | 1.25 | 0.61 | 0.75 | 0.15 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQ4 | 32085 | 2023-10-03 | 2021-10-19 | 3.2 | 3.54 | — | 3.6 | 0.007 | 0.74 | 0.0 | 0.04 | 16.10 | 0.00 | 2.155 | 9.59 | 2.30 | 6.6 | 93.4 | 0.0 | -1.96 | 0.61 | 0.79 | 1.10 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 17.32 | 0.00 | 2.224 | 8.97 | 0.43 | 4.2 | 95.8 | 0.0 | 2.91 | 0.79 | 0.59 | 0.78 | 0.16 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |