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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V82 | 31787 | 2023-10-19 | 2021-08-22 | 2.8 | 3.88 | — | 3.0 | 0.005 | 0.62 | 0.0 | 0.05 | 14.02 | 0.00 | 2.150 | 10.11 | 0.00 | 5.1 | 94.9 | 0.0 | -0.41 | 0.84 | 0.78 | 1.93 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 15.36 | 0.00 | 2.176 | 9.60 | 0.81 | 5.0 | 95.0 | 0.0 | -0.04 | 0.32 | 0.87 | 0.83 | 1.62 | 40092 | 4902 | 39 | 0 | 84 | 0 | 0 | logfile |
✔ | 7V8B | 31796 | 2023-10-03 | 2021-08-22 | 3.2 | 3.85 | — | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.74 | 0.00 | 2.308 | 6.16 | 0.00 | 5.0 | 94.8 | 0.1 | -0.34 | 0.79 | 0.85 | 2.31 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 16.25 | 0.00 | 2.142 | 5.16 | 0.43 | 5.0 | 94.8 | 0.1 | 0.28 | 1.16 | 0.79 | 0.88 | 2.22 | 6650 | 797 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2023-10-19 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.68 | 0.01 | 1.902 | 16.83 | 0.00 | 16.7 | 83.1 | 0.2 | -3.08 | 1.48 | 0.82 | 0.74 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 7YG8 | 33811 | 2023-10-04 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 14.91 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.65 | 0.0 | 0.04 | 16.08 | 0.00 | 1.846 | 19.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |
✔ | 7AST | 11904 | 2023-10-17 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.95 | 0.0 | 0.05 | 17.52 | 0.01 | 2.125 | 25.76 | 0.29 | 16.7 | 83.0 | 0.3 | -3.63 | 1.41 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 7XU5 | 33459 | 2023-10-20 | 2022-05-18 | 3.1 | 3.44 | 2.94 | 3.2 | 0.008 | 0.76 | 0.0 | 0.05 | 13.78 | 0.00 | 2.104 | 2.92 | 0.00 | 3.9 | 96.1 | 0.0 | -1.17 | 0.84 | 0.82 | 2.48 | 3.2 | 0.004 | 0.50 | 0.0 | 0.04 | 14.22 | 0.00 | 1.969 | 5.79 | 0.16 | 4.1 | 95.9 | 0.0 | -0.51 | 0.33 | 0.85 | 0.85 | 2.11 | 44292 | 2814 | 12 | 0 | 45 | 0 | 21549 | logfile |
✔ | 7D4G | 30573 | 2023-10-02 | 2020-09-23 | 3.9 | 4.13 | — | 4.1 | 0.006 | 1.06 | 1.0 | 0.06 | 9.87 | 0.01 | 1.917 | 36.47 | 0.00 | 10.7 | 88.9 | 0.4 | -3.84 | 0.56 | 0.52 | 1.34 | 4.1 | 0.004 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 2.196 | 21.81 | 1.39 | 12.3 | 87.4 | 0.2 | -2.19 | 3.65 | 0.65 | 0.71 | 1.77 | 3925 | 502 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oF3 | 12868 | 2023-10-19 | 2021-05-04 | 2.7 | 3.23 | 2.69 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 14.76 | 0.00 | 1.761 | 5.69 | 0.00 | 3.2 | 96.8 | 0.0 | 1.34 | 0.88 | 0.88 | 3.46 | 3.0 | 0.006 | 0.68 | 0.0 | 0.04 | 16.30 | 0.00 | 1.838 | 10.85 | 1.58 | 3.4 | 96.6 | 0.0 | 0.95 | 1.20 | 0.88 | 0.90 | 3.21 | 101226 | 8627 | 61 | 1442 | 63 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-10-02 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7S4V | 24835 | 2023-10-06 | 2021-09-09 | 3.28 | 3.87 | — | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.44 | 0.00 | 2.202 | 4.81 | 0.00 | 5.0 | 95.0 | 0.0 | -1.46 | 0.80 | 0.80 | 2.24 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 18.43 | 0.00 | 2.219 | 5.28 | 0.10 | 4.2 | 95.8 | 0.0 | -0.51 | 0.56 | 0.85 | 0.87 | 2.02 | 12215 | 1122 | 4 | 145 | 0 | 0 | 0 | logfile |
✔ | 7WU9 | 32824 | 2023-10-03 | 2022-02-07 | 3.375 | 3.51 | 3.21 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 13.28 | 0.00 | 2.137 | 6.33 | 0.00 | 3.0 | 97.0 | 0.0 | 1.21 | 0.71 | 0.82 | 3.04 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.22 | 0.00 | 2.261 | 8.40 | 0.43 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.68 | 0.83 | 2.14 | 7369 | 1030 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YGB | 33814 | 2023-10-04 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 14.46 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 14.93 | 0.00 | 1.835 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.90 | 0.91 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |
✔ | 7EB2 | 31049 | 2023-10-09 | 2021-03-08 | 3.5 | 3.43 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.11 | 11.74 | 0.00 | 2.092 | 7.56 | 0.00 | 3.6 | 96.4 | 0.0 | -1.24 | 0.79 | 0.74 | 1.53 | 3.4 | 0.004 | 0.98 | 0.0 | 0.06 | 15.41 | 0.00 | 2.024 | 17.79 | 1.04 | 3.5 | 96.5 | 0.0 | -0.29 | 1.08 | 0.81 | 0.76 | 1.33 | 18497 | 2337 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7V7E | 31768 | 2023-10-12 | 2021-08-21 | 2.9 | 3.84 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.05 | 13.63 | 0.00 | 2.106 | 7.79 | 0.00 | 5.0 | 95.0 | 0.1 | -0.18 | 0.87 | 0.84 | 2.51 | 3.3 | 0.006 | 0.67 | 0.0 | 0.05 | 15.15 | 0.00 | 2.133 | 9.41 | 1.66 | 5.8 | 94.1 | 0.1 | -0.33 | 1.14 | 0.87 | 0.85 | 2.15 | 25340 | 3093 | 40 | 0 | 82 | 0 | 0 | logfile |
✔ | 6PM4 | 20386 | 2023-10-07 | 2019-07-01 | 4.0 | 5.19 | — | 4.0 | 0.007 | 0.96 | 0.0 | 0.05 | 10.22 | 0.01 | 2.236 | 7.62 | 0.00 | 9.9 | 90.1 | 0.0 | -4.33 | 0.76 | 0.85 | — | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.171 | 18.81 | 0.27 | 6.3 | 93.7 | 0.0 | -1.27 | 1.21 | 0.77 | 0.85 | — | 14055 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7STE | 25426 | 2023-10-14 | 2021-11-12 | 2.73 | 3.42 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 13.77 | 0.00 | 2.030 | 3.56 | 0.00 | 2.0 | 98.0 | 0.0 | 3.20 | 0.82 | 0.83 | 2.63 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.55 | 0.00 | 1.926 | 6.48 | 0.44 | 2.5 | 97.5 | 0.0 | 2.66 | 1.19 | 0.81 | 0.87 | 3.06 | 28628 | 1774 | 10 | 0 | 6 | 0 | 14379 | logfile |
✔ | 7F63 | 31471 | 2023-10-02 | 2021-06-24 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 13.34 | 0.00 | 2.136 | 12.60 | 0.00 | 8.3 | 91.4 | 0.2 | -2.31 | 0.63 | 0.62 | 1.27 | 4.0 | 0.003 | 0.85 | 0.0 | 0.05 | 15.96 | 0.00 | 2.134 | 18.07 | 0.54 | 10.0 | 89.5 | 0.5 | -2.84 | 1.79 | 0.65 | 0.69 | 1.81 | 3375 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DZY | 30921 | 2023-10-09 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.83 | 0.0 | 0.00 | 5.21 | 0.00 | 2.105 | 3.02 | 0.00 | 10.5 | 89.3 | 0.2 | -2.46 | 2.13 | 0.71 | 0.70 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V7R | 31779 | 2023-10-12 | 2021-08-21 | 2.9 | 3.74 | — | 3.2 | 0.004 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.163 | 6.28 | 0.00 | 4.5 | 95.4 | 0.1 | 0.06 | 0.89 | 0.87 | 2.64 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 14.81 | 0.00 | 2.180 | 6.28 | 1.07 | 4.5 | 95.4 | 0.1 | 0.27 | 0.27 | 0.88 | 0.87 | 2.31 | 25362 | 3095 | 42 | 0 | 84 | 0 | 0 | logfile |
✔ | 7oF5 | 12870 | 2023-10-19 | 2021-05-04 | 2.9 | 3.33 | 2.91 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.82 | 0.01 | 1.796 | 4.95 | 0.00 | 3.2 | 96.8 | 0.0 | 1.19 | 0.85 | 0.87 | 3.15 | 3.1 | 0.005 | 0.75 | 0.0 | 0.04 | 16.84 | 0.01 | 1.809 | 13.97 | 2.07 | 4.0 | 96.0 | 0.0 | 0.54 | 0.70 | 0.86 | 0.90 | 2.89 | 102785 | 8829 | 63 | 1445 | 75 | 0 | 0 | logfile |