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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PoD | 20412 | 2023-11-13 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✔ | 8AYN | 15717 | 2023-11-16 | 2022-09-02 | 2.8 | 2.38 | 2.63 | 2.8 | 0.013 | 1.23 | 0.0 | 0.05 | 15.14 | 0.00 | 2.003 | 5.50 | 0.00 | 3.9 | 96.1 | 0.0 | 0.76 | 0.68 | 0.80 | 3.90 | 2.8 | 0.006 | 0.64 | 0.0 | 0.04 | 16.36 | 0.00 | 2.151 | 6.65 | 1.91 | 2.8 | 97.2 | 0.0 | 0.58 | 1.17 | 0.64 | 0.81 | 3.62 | 15748 | 1998 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 8AA2 | 15291 | 2023-11-22 | 2022-06-29 | 3.1 | 3.39 | 2.97 | 3.2 | 0.012 | 0.60 | 0.0 | 0.09 | 13.22 | 0.00 | 1.958 | 7.56 | 0.00 | 3.3 | 96.6 | 0.1 | 0.59 | 0.84 | 0.86 | 3.61 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 14.48 | 0.00 | 1.885 | 7.11 | 0.19 | 3.3 | 96.7 | 0.1 | -0.19 | 1.56 | 0.85 | 0.90 | 3.88 | 35942 | 4472 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 7A4N | 11639 | 2023-11-18 | 2020-08-20 | 2.75 | 2.48 | — | 2.7 | 0.007 | 0.81 | 1.0 | 0.10 | 12.87 | 0.00 | 2.003 | 5.21 | 0.20 | 3.9 | 96.1 | 0.0 | -2.00 | 0.77 | 0.81 | 3.64 | 2.6 | 0.005 | 0.63 | 0.0 | 0.05 | 14.98 | 0.00 | 2.072 | 6.95 | 1.51 | 4.1 | 95.9 | 0.0 | -0.51 | 0.55 | 0.78 | 0.87 | 3.32 | 22809 | 2889 | 9 | 0 | 21 | 0 | 0 | logfile |
✔ | 7RAZ | 24390 | 2023-11-15 | 2021-07-05 | 3.4 | 4.46 | 3.18 | 3.9 | 0.004 | 0.87 | 0.0 | 0.04 | 13.50 | 0.00 | 2.201 | 11.69 | 0.00 | 2.3 | 97.7 | 0.0 | 1.13 | 0.79 | 0.85 | 2.19 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.04 | 0.00 | 2.113 | 14.03 | 0.45 | 2.5 | 97.5 | 0.0 | 1.10 | 0.40 | 0.79 | 0.87 | 2.20 | 10472 | 1330 | 14 | 0 | 7 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-11-22 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F4i | 31453 | 2023-11-14 | 2021-06-18 | 3.1 | 3.87 | — | 3.5 | 0.009 | 1.21 | 0.0 | 0.06 | 11.96 | 0.01 | 2.169 | 1.75 | 0.00 | 4.3 | 95.7 | 0.0 | -0.38 | 0.67 | 0.82 | 3.32 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 14.94 | 0.00 | 2.222 | 10.12 | 0.47 | 2.2 | 97.8 | 0.0 | 1.37 | 2.50 | 0.66 | 0.83 | 2.24 | 8031 | 1030 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WiK | 21684 | 2023-11-13 | 2020-04-10 | 3.4 | 4.22 | — | 3.8 | 0.012 | 1.27 | 0.0 | 0.08 | 13.63 | 0.01 | 2.078 | 32.26 | 2.55 | 10.5 | 87.3 | 2.2 | -3.88 | 0.68 | 0.67 | 1.12 | 3.9 | 0.004 | 0.92 | 0.0 | 0.04 | 16.22 | 0.00 | 2.135 | 17.12 | 0.55 | 5.1 | 94.5 | 0.5 | -0.13 | 1.04 | 0.71 | 0.76 | 1.20 | 6078 | 859 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiW | 26555 | 2023-11-18 | 2022-03-29 | 3.33 | 3.27 | — | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 13.74 | 0.00 | 2.005 | 2.75 | 0.02 | 0.3 | 99.7 | 0.0 | -0.17 | 0.59 | 0.75 | 2.41 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 16.63 | 0.00 | 1.810 | 9.34 | 0.47 | 2.6 | 97.4 | 0.0 | 0.28 | 0.83 | 0.61 | 0.82 | 2.57 | 75891 | 4792 | 19 | 0 | 17 | 0 | 38115 | logfile |
✘ | 7o6E | 12738 | 2023-11-21 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 8E8o | 27945 | 2023-11-17 | 2022-08-25 | 2.77 | 3.96 | 2.79 | 3.4 | 0.007 | 0.75 | 0.0 | 0.05 | 13.98 | 0.00 | 2.148 | 9.75 | 0.00 | 5.6 | 94.4 | 0.0 | -2.82 | 0.86 | 0.79 | 3.49 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.66 | 0.00 | 2.221 | 8.34 | 0.21 | 4.7 | 95.3 | 0.0 | 0.13 | 1.55 | 0.91 | 0.87 | 2.50 | 17704 | 2224 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LX5 | 23566 | 2023-11-13 | 2021-03-03 | 3.44 | 3.85 | 3.41 | 3.9 | 0.005 | 0.62 | 0.0 | 0.04 | 10.10 | 0.00 | 2.198 | 4.72 | 0.00 | 3.4 | 96.6 | 0.0 | -0.46 | 0.71 | 0.81 | 3.26 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 15.48 | 0.00 | 2.191 | 10.91 | 1.08 | 2.9 | 97.1 | 0.0 | -0.18 | 1.43 | 0.70 | 0.81 | 3.17 | 3485 | 448 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiY | 26557 | 2023-11-19 | 2022-03-29 | 3.22 | 3.19 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.04 | 14.26 | 0.00 | 1.981 | 3.47 | 0.00 | 0.3 | 99.7 | 0.0 | -0.25 | 0.60 | 0.81 | 3.14 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.78 | 0.00 | 1.873 | 9.28 | 0.15 | 2.7 | 97.3 | 0.0 | 0.45 | 0.68 | 0.61 | 0.85 | 2.98 | 76262 | 4819 | 20 | 0 | 17 | 0 | 38283 | logfile |
✔ | 8D7X | 27237 | 2023-11-15 | 2022-06-07 | 3.4 | 3.65 | 3.41 | 3.5 | 0.006 | 0.65 | 1.0 | 0.05 | 13.45 | 0.00 | 2.219 | 8.94 | 0.60 | 8.6 | 91.2 | 0.2 | -2.20 | 0.74 | 0.76 | 3.37 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.49 | 0.00 | 2.200 | 7.82 | 0.24 | 7.2 | 92.7 | 0.1 | -1.80 | 0.31 | 0.82 | 0.86 | 2.69 | 10108 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VGQ | 21199 | 2023-11-17 | 2020-01-08 | 3.5 | 3.74 | — | 3.8 | 0.005 | 0.88 | 0.0 | 0.04 | 9.86 | 0.01 | 1.335 | 1.32 | 0.00 | 1.7 | 98.3 | 0.0 | 0.69 | 0.63 | 0.76 | 2.44 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.85 | 0.00 | 2.187 | 8.34 | 0.20 | 1.9 | 97.8 | 0.3 | 1.54 | 1.33 | 0.69 | 0.83 | 2.69 | 19348 | 2527 | 21 | 0 | 7 | 0 | 0 | logfile |
✔ | 7F4D | 31448 | 2023-11-14 | 2021-06-18 | 3.0 | 3.72 | — | 3.4 | 0.009 | 1.07 | 0.0 | 0.06 | 12.50 | 0.01 | 2.011 | 3.93 | 0.00 | 3.5 | 96.5 | 0.0 | -0.88 | 0.69 | 0.82 | 3.59 | 3.4 | 0.003 | 0.78 | 0.0 | 0.04 | 15.26 | 0.00 | 2.166 | 13.27 | 2.30 | 2.4 | 97.6 | 0.0 | 1.18 | 1.33 | 0.69 | 0.82 | 2.46 | 8047 | 1030 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MTD | 23983 | 2023-11-17 | 2021-05-13 | 3.5 | 2.75 | 3.50 | 3.5 | 0.007 | 0.89 | 0.0 | 0.06 | 9.53 | 0.01 | 2.308 | 2.25 | 0.15 | 6.5 | 93.5 | 0.0 | -4.05 | 0.71 | 0.81 | 2.91 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.06 | 0.00 | 2.203 | 5.04 | 0.10 | 4.6 | 95.3 | 0.1 | -0.64 | 1.12 | 0.72 | 0.81 | 2.52 | 18833 | 2348 | 20 | 0 | 41 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-11-15 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XTQ | 33452 | 2023-11-14 | 2022-05-17 | 3.2 | 2.29 | 3.30 | 2.1 | 0.004 | 0.75 | 0.0 | 0.05 | 12.54 | 0.01 | 2.192 | 5.84 | 0.00 | 3.1 | 96.9 | 0.0 | -0.37 | 0.73 | 0.74 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8010 | 1027 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-11-13 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |