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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W02 | 32234 | 2023-11-15 | 2021-11-17 | 3.3 | 3.44 | — | 3.4 | 0.007 | 0.89 | 0.0 | 0.05 | 14.65 | 0.00 | 1.892 | 7.36 | 0.23 | 10.9 | 89.1 | 0.1 | -3.18 | 0.68 | 0.87 | 2.65 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 15.86 | 0.00 | 1.978 | 5.78 | 0.16 | 7.5 | 92.4 | 0.1 | -1.36 | 0.32 | 0.68 | 0.88 | 2.02 | 12326 | 1566 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7DTC | 30850 | 2023-11-14 | 2021-01-04 | 3.3 | 3.73 | — | 3.6 | 0.004 | 0.70 | 0.0 | 0.04 | 14.15 | 0.00 | 2.201 | 12.28 | 0.49 | 7.9 | 91.6 | 0.4 | -3.34 | 0.52 | 0.80 | 1.81 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 15.99 | 0.00 | 2.219 | 11.11 | 0.59 | 8.1 | 91.8 | 0.1 | 0.24 | 1.35 | 0.54 | 0.82 | 1.38 | 9363 | 1151 | 1 | 0 | 9 | 0 | 0 | logfile |
✔ | 6XoS | 22278 | 2023-11-14 | 2020-07-07 | 3.7 | 4.30 | 3.63 | 3.9 | 0.009 | 1.09 | 0.0 | 0.06 | 13.21 | 0.01 | 2.225 | 2.95 | 0.00 | 2.4 | 97.6 | 0.0 | -1.45 | 0.89 | 0.82 | 1.85 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 14.50 | 0.00 | 2.139 | 8.51 | 0.12 | 2.1 | 97.9 | 0.0 | 1.56 | 0.98 | 0.89 | 0.85 | 1.81 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XoT | 22279 | 2023-11-14 | 2020-07-07 | 3.9 | 4.56 | 3.90 | 4.1 | 0.006 | 1.07 | 0.0 | 0.06 | 14.01 | 0.01 | 2.272 | 5.76 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.86 | 0.74 | 0.81 | 4.2 | 0.003 | 0.86 | 0.0 | 0.05 | 15.83 | 0.01 | 2.098 | 16.89 | 0.35 | 2.4 | 97.6 | 0.0 | 0.83 | 1.82 | 0.87 | 0.80 | 1.12 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-11-13 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XoU | 22280 | 2023-11-14 | 2020-07-07 | 4.0 | 4.67 | 4.02 | 4.1 | 0.005 | 1.06 | 0.0 | 0.06 | 13.63 | 0.01 | 2.261 | 4.13 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.89 | 0.75 | — | 4.1 | 0.003 | 0.85 | 0.0 | 0.04 | 14.98 | 0.00 | 2.141 | 12.38 | 0.70 | 2.9 | 97.1 | 0.0 | 1.17 | 1.78 | 0.91 | 0.85 | — | 7697 | 965 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N76 | 24221 | 2023-11-14 | 2021-06-09 | 2.9 | 3.57 | 2.96 | 3.3 | 0.005 | 0.64 | 0.0 | 0.07 | 12.16 | 0.00 | 2.074 | 5.80 | 0.00 | 3.3 | 96.7 | 0.0 | 0.22 | 0.70 | 0.83 | 3.50 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 13.90 | 0.00 | 2.215 | 5.87 | 0.84 | 1.6 | 98.4 | 0.0 | 2.30 | 1.13 | 0.68 | 0.84 | 2.18 | 7399 | 1036 | 1 | 0 | 0 | 3 | 0 | logfile |
✔ | 7JGF | 22325 | 2023-11-13 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.8 | 0.002 | 0.47 | 0.0 | 0.04 | 13.18 | 0.00 | 2.190 | 46.28 | 0.41 | 4.8 | 95.2 | 0.0 | 1.10 | 0.62 | 0.41 | 0.45 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 7WNX | 32634 | 2023-11-15 | 2022-01-20 | 3.36 | 3.85 | — | 3.7 | 0.033 | 0.94 | 0.0 | 0.18 | 14.67 | 0.00 | 2.209 | 8.77 | 0.50 | 8.2 | 91.5 | 0.3 | -2.32 | 0.64 | 0.83 | 1.69 | 3.7 | 0.005 | 0.77 | 0.0 | 0.09 | 15.47 | 0.01 | 1.773 | 19.73 | 0.33 | 8.2 | 91.8 | 0.0 | -1.84 | 0.34 | 0.66 | 0.85 | 1.55 | 5643 | 734 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oCH | 12807 | 2023-11-14 | 2021-04-26 | 3.14 | 3.53 | 3.21 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.97 | 0.00 | 2.072 | 3.99 | 3.80 | 6.6 | 93.4 | 0.0 | -2.88 | 0.89 | 0.86 | 2.83 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 16.26 | 0.00 | 2.023 | 4.46 | 0.09 | 6.7 | 93.3 | 0.0 | 0.32 | 0.48 | 0.90 | 0.90 | 2.36 | 9516 | 1181 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7QFP | 13946 | 2023-11-14 | 2021-12-06 | 3.7 | 4.43 | 3.74 | 4.1 | 0.007 | 1.11 | 4.0 | 0.08 | 15.77 | 0.01 | 2.167 | 19.15 | 4.14 | 12.5 | 86.9 | 0.6 | -4.48 | 0.84 | 0.72 | 0.85 | 4.1 | 0.003 | 0.77 | 0.0 | 0.05 | 16.83 | 0.00 | 2.118 | 16.48 | 0.44 | 11.9 | 88.0 | 0.1 | -2.89 | 0.77 | 0.85 | 0.76 | 0.24 | 9996 | 1233 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JND | 9848 | 2023-11-13 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 3.79 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | 3.9 | 0.004 | 0.65 | 0.0 | 0.05 | 15.55 | 0.00 | 2.233 | 8.48 | 0.29 | 4.3 | 95.7 | 0.0 | -0.90 | 1.27 | 0.48 | 0.87 | 2.03 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7T8T | 25745 | 2023-11-17 | 2021-12-17 | 3.68 | 4.13 | — | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.83 | 0.00 | 2.195 | 4.02 | 0.00 | 5.7 | 94.2 | 0.1 | -0.81 | 0.80 | 0.74 | 1.85 | 3.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.88 | 0.00 | 2.160 | 7.34 | 0.00 | 7.4 | 92.5 | 0.2 | -1.13 | 0.45 | 0.81 | 0.75 | 1.97 | 17434 | 1086 | 1 | 0 | 1 | 0 | 8626 | logfile |
✔ | 7N98 | 24252 | 2023-11-13 | 2021-06-17 | 3.5 | 3.78 | 3.89 | 4.0 | 0.004 | 0.72 | 0.0 | 0.05 | 13.69 | 0.01 | 2.217 | 11.62 | 0.27 | 8.5 | 91.5 | 0.0 | -1.56 | 0.51 | 0.82 | 3.02 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 16.81 | 0.01 | 2.245 | 8.30 | 1.07 | 7.6 | 92.4 | 0.0 | 0.09 | 0.51 | 0.50 | 0.81 | 1.11 | 3625 | 473 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FJM | 31623 | 2023-11-14 | 2021-08-04 | 3.3 | 3.57 | — | 3.5 | 0.014 | 1.57 | 16.0 | 0.12 | 11.98 | 0.01 | 2.194 | 5.81 | 3.44 | 9.2 | 90.3 | 0.5 | -4.28 | 0.65 | 0.76 | 2.17 | 3.5 | 0.003 | 0.74 | 0.0 | 0.04 | 13.91 | 0.01 | 2.162 | 7.30 | 0.14 | 7.0 | 92.7 | 0.3 | -1.10 | 1.70 | 0.65 | 0.82 | 1.33 | 7086 | 973 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-11-14 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oE3 | 12860 | 2023-11-15 | 2021-05-01 | 3.35 | 4.05 | 3.43 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.00 | 2.179 | 5.99 | 3.39 | 8.2 | 91.8 | 0.0 | -2.02 | 0.92 | 0.87 | 2.22 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.07 | 0.00 | 2.102 | 7.34 | 0.22 | 8.0 | 92.0 | 0.0 | 0.32 | 0.41 | 0.93 | 0.90 | 1.77 | 11904 | 1478 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7N72 | 24217 | 2023-11-14 | 2021-06-09 | 2.5 | 3.08 | 2.57 | 2.9 | 0.007 | 1.35 | 0.0 | 0.06 | 13.10 | 0.01 | 1.971 | 6.06 | 0.00 | 1.4 | 98.6 | 0.0 | -0.87 | 0.72 | 0.85 | 3.04 | 2.9 | 0.004 | 0.86 | 0.0 | 0.04 | 14.42 | 0.00 | 1.683 | 5.79 | 0.40 | 2.4 | 97.6 | 0.0 | 2.13 | 0.44 | 0.67 | 0.83 | 3.01 | 7705 | 1030 | 1 | 0 | 11 | 5 | 0 | logfile |
✔ | 8GUA | 34271 | 2023-11-14 | 2022-09-11 | 2.77 | 2.80 | 2.65 | 2.9 | 0.007 | 0.69 | 0.0 | 0.04 | 14.82 | 0.01 | 2.224 | 10.99 | 0.13 | 3.8 | 95.9 | 0.2 | -0.79 | 0.53 | 0.61 | 2.00 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 17.18 | 0.00 | 2.155 | 13.99 | 1.53 | 4.4 | 95.5 | 0.1 | -0.08 | 0.43 | 0.56 | 0.65 | 2.11 | 7017 | 855 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CXo | 27062 | 2023-11-13 | 2022-05-22 | 3.7 | 4.10 | 3.65 | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 10.02 | 0.00 | 2.329 | 2.39 | 0.00 | 2.7 | 96.9 | 0.4 | 1.90 | 0.60 | 0.77 | 1.79 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.193 | 15.37 | 0.00 | 4.0 | 96.0 | 0.0 | 1.05 | 2.10 | 0.62 | 0.80 | 0.56 | 4392 | 551 | 1 | 0 | 1 | 0 | 0 | logfile |