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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Q2Q | 13780 | 2023-11-15 | 2021-10-26 | 4.3 | 3.37 | — | 3.6 | 0.010 | 1.40 | 0.0 | 0.08 | 11.79 | 0.01 | 1.166 | 18.08 | 0.00 | 8.5 | 90.7 | 0.8 | -4.23 | 0.58 | 0.71 | — | 3.3 | 0.005 | 0.75 | 0.0 | 0.04 | 14.75 | 0.01 | 2.066 | 14.62 | 0.15 | 5.0 | 95.0 | 0.0 | -1.77 | 1.52 | 0.60 | 0.75 | — | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7QiG | 13989 | 2023-11-13 | 2021-12-14 | 2.7 | 2.81 | — | 2.8 | 0.005 | 0.69 | 0.0 | 0.05 | 14.67 | 0.01 | 2.138 | 2.72 | 0.00 | 8.7 | 91.3 | 0.0 | -4.18 | 0.37 | 0.86 | 6.92 | 2.8 | 0.003 | 0.64 | 0.0 | 0.05 | 17.73 | 0.00 | 2.134 | 6.24 | 0.87 | 10.0 | 90.0 | 0.0 | -4.19 | 0.62 | 0.38 | 0.87 | 5.69 | 3213 | 396 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E5F | 27911 | 2023-11-15 | 2022-08-22 | 3.8 | 4.11 | 3.84 | 4.0 | 0.017 | 1.17 | 0.0 | 0.06 | 16.51 | 0.01 | 2.029 | 22.93 | 0.00 | 12.7 | 87.3 | 0.0 | -2.96 | 0.71 | 0.84 | 3.52 | 4.1 | 0.007 | 0.96 | 1.0 | 0.05 | 16.96 | 0.00 | 2.120 | 12.79 | 0.60 | 17.3 | 82.7 | 0.1 | -3.44 | 0.48 | 0.72 | 0.86 | 3.46 | 11890 | 1465 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 7EJE | 31160 | 2023-11-14 | 2021-04-02 | 3.98 | 4.18 | — | 4.0 | 0.009 | 1.30 | 0.0 | 0.05 | 15.13 | 0.00 | 1.454 | 41.99 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.58 | 0.73 | 1.42 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 18.69 | 0.00 | 1.940 | 15.11 | 0.54 | 4.6 | 94.5 | 1.0 | 0.38 | 4.28 | 0.63 | 0.84 | 1.35 | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2023-11-17 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.80 | 0.00 | 2.127 | 7.91 | 0.05 | 4.5 | 95.5 | 0.0 | 0.66 | 2.27 | 0.77 | 0.84 | 1.68 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✔ | 6L1T | 0801 | 2023-11-14 | 2019-09-30 | 3.22 | 3.42 | — | 3.4 | 0.011 | 0.92 | 0.0 | 0.06 | 14.06 | 0.00 | 2.296 | 12.89 | 0.00 | 12.6 | 87.4 | 0.0 | -5.37 | 0.49 | 0.84 | 2.71 | 3.4 | 0.005 | 0.73 | 0.0 | 0.05 | 16.05 | 0.00 | 2.215 | 11.78 | 0.44 | 10.0 | 90.0 | 0.0 | -4.06 | 1.41 | 0.49 | 0.86 | 3.50 | 7010 | 1000 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ADW | 15372 | 2023-11-14 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Ci5 | 16670 | 2023-11-15 | 2023-02-08 | 3.2 | 2.86 | 3.15 | 3.1 | 0.014 | 1.19 | 0.0 | 0.07 | 15.03 | 0.01 | 2.190 | 3.74 | 0.00 | 8.3 | 91.1 | 0.6 | -3.88 | 0.79 | 0.85 | 4.05 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 15.66 | 0.00 | 2.195 | 6.22 | 0.09 | 4.0 | 95.9 | 0.1 | 0.50 | 0.93 | 0.79 | 0.86 | 3.57 | 10365 | 1258 | 2 | 11 | 0 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2023-11-13 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 12.80 | 0.00 | 2.338 | 11.00 | 0.00 | 4.3 | 95.7 | 0.0 | -3.48 | 1.60 | 0.32 | 0.73 | 4.73 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TCo | 25815 | 2023-11-18 | 2021-12-27 | 4.19 | 4.96 | — | 4.3 | 0.005 | 1.06 | 0.0 | 0.06 | 13.38 | 0.01 | 2.228 | 2.57 | 0.00 | 6.4 | 93.5 | 0.1 | -1.29 | 0.86 | 0.82 | — | 4.3 | 0.011 | 0.79 | 0.0 | 0.05 | 13.42 | 0.01 | 2.047 | 12.56 | 0.00 | 8.2 | 91.8 | 0.0 | -0.74 | 0.53 | 0.86 | 0.84 | — | 23973 | 2979 | 27 | 0 | 57 | 0 | 0 | logfile |
✔ | 5W7V | 8781 | 2023-11-17 | 2017-06-20 | 3.8 | 3.42 | — | 3.5 | 0.007 | 0.77 | 0.0 | 0.06 | 12.79 | 0.00 | 2.365 | 15.84 | 0.00 | 1.4 | 98.6 | 0.0 | -2.52 | 0.47 | 0.74 | 3.24 | 3.4 | 0.006 | 0.83 | 0.0 | 0.06 | 15.83 | 0.00 | 2.285 | 7.47 | 2.21 | 3.3 | 96.7 | 0.0 | -0.77 | 1.27 | 0.54 | 0.79 | 3.99 | 20430 | 2640 | 270 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iBN | 35344 | 2023-11-14 | 2023-02-10 | 3.03 | 3.55 | 3.13 | 3.5 | 0.007 | 0.99 | 0.0 | 0.06 | 13.66 | 0.00 | 2.296 | 8.00 | 0.00 | 4.0 | 96.0 | 0.0 | -1.98 | 0.60 | 0.53 | 0.83 | 3.5 | 0.003 | 0.62 | 0.0 | 0.05 | 15.79 | 0.00 | 2.053 | 15.49 | 0.45 | 4.1 | 95.9 | 0.0 | -0.82 | 1.18 | 0.62 | 0.57 | 0.91 | 8940 | 1224 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2023-11-15 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 21.88 | 0.01 | 2.197 | 7.01 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.74 | 0.00 | 2.150 | 14.50 | 0.00 | 9.5 | 90.2 | 0.3 | -1.36 | 2.82 | 0.63 | 0.76 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6VCC | 21148 | 2023-11-14 | 2019-12-20 | 3.6 | 3.10 | 3.54 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 12.50 | 0.01 | 2.253 | 4.58 | 0.00 | 3.6 | 96.4 | 0.0 | -4.54 | 0.53 | 0.68 | 2.77 | 3.4 | 0.003 | 0.68 | 0.0 | 0.05 | 15.88 | 0.00 | 2.032 | 10.75 | 0.12 | 2.4 | 97.6 | 0.0 | -1.97 | 1.68 | 0.56 | 0.72 | 3.38 | 7572 | 936 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2023-11-13 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.004 | 0.56 | 0.0 | 0.05 | 15.99 | 0.00 | 2.267 | 5.33 | 0.41 | 2.1 | 97.9 | 0.0 | -3.56 | 0.35 | 0.47 | 0.85 | 5.11 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RX4 | 24724 | 2023-11-15 | 2021-08-21 | 3.8 | 3.99 | — | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 13.38 | 0.00 | 1.928 | 12.86 | 0.00 | 0.0 | 100.0 | 0.0 | 6.26 | 0.60 | 0.78 | 1.41 | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 16.36 | 0.00 | 2.337 | 5.07 | 1.27 | 0.0 | 100.0 | 0.0 | 6.07 | 0.49 | 0.62 | 0.80 | 0.89 | 13560 | 1740 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TSV | 10566 | 2023-11-18 | 2019-12-21 | 3.78 | 3.86 | — | 3.8 | 0.011 | 1.20 | 0.0 | 0.08 | 11.73 | 0.01 | 2.334 | 11.82 | 0.00 | 10.6 | 89.4 | 0.0 | -4.47 | 0.82 | 0.85 | 2.68 | 3.8 | 0.005 | 0.93 | 0.0 | 0.05 | 16.74 | 0.00 | 2.063 | 22.31 | 1.24 | 9.0 | 91.0 | 0.0 | -2.71 | 1.69 | 0.84 | 0.86 | 0.88 | 23832 | 3216 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2023-11-13 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.008 | 0.76 | 0.0 | 0.06 | 14.95 | 0.00 | 2.266 | 10.97 | 0.43 | 17.2 | 82.8 | 0.0 | -4.97 | 0.49 | 0.59 | 0.84 | 4.82 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PES | 20331 | 2023-11-13 | 2019-06-20 | 3.6 | 3.82 | — | 4.0 | 0.009 | 0.70 | 0.0 | 0.06 | 12.87 | 0.01 | 2.432 | 11.45 | 0.00 | 12.3 | 87.7 | 0.0 | -1.79 | 0.38 | 0.78 | 1.73 | 4.0 | 0.004 | 0.61 | 0.0 | 0.05 | 14.62 | 0.00 | 2.275 | 9.16 | 0.24 | 7.5 | 92.5 | 0.0 | -2.54 | 0.55 | 0.43 | 0.82 | 2.73 | 4040 | 590 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N8N | 3600 | 2023-11-17 | 2017-02-23 | 3.28 | 3.38 | — | 3.4 | 0.019 | 1.34 | 0.0 | 0.12 | 11.08 | 0.01 | 1.755 | 21.54 | 0.81 | 4.4 | 95.6 | 0.0 | -2.91 | 0.40 | 0.82 | 2.76 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.66 | 0.00 | 2.088 | 10.65 | 0.34 | 6.0 | 93.4 | 0.6 | 0.02 | 1.47 | 0.42 | 0.85 | 2.38 | 70035 | 8895 | 30 | 0 | 0 | 0 | 0 | logfile |