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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6V8P | 21108 | 2023-11-16 | 2019-12-11 | 4.1 | 4.54 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.81 | 11.30 | 0.00 | 2.210 | 3.96 | 0.29 | 6.7 | 93.2 | 0.0 | -2.58 | 0.82 | 0.79 | — | 4.2 | 0.009 | 1.50 | 0.0 | 0.26 | 11.97 | 0.01 | 2.061 | 12.84 | 0.00 | 10.4 | 89.6 | 0.0 | -0.79 | 1.64 | 0.85 | 0.84 | — | 14548 | 2117 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6DMo | 7964 | 2023-11-14 | 2018-06-05 | 4.1 | 4.16 | — | 4.1 | 0.008 | 1.27 | 0.0 | 0.06 | 13.73 | 0.01 | 1.764 | 8.90 | 2.78 | 11.1 | 88.6 | 0.3 | -4.11 | 0.55 | 0.64 | — | 4.1 | 0.003 | 0.83 | 0.0 | 0.05 | 13.68 | 0.00 | 2.175 | 14.88 | 0.00 | 9.1 | 90.9 | 0.0 | -0.52 | 2.16 | 0.58 | 0.71 | — | 7853 | 982 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 6UGE | 20762 | 2023-11-16 | 2019-09-26 | 3.6 | 4.02 | — | 3.9 | 0.008 | 1.07 | 0.0 | 0.05 | 14.24 | 0.01 | 2.060 | 3.35 | 0.23 | 6.4 | 93.6 | 0.1 | -4.80 | 0.71 | 0.69 | 1.89 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 15.72 | 0.00 | 1.974 | 5.45 | 0.15 | 4.1 | 95.9 | 0.0 | -0.72 | 0.45 | 0.77 | 0.82 | 1.38 | 13876 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✔ | 8iW7 | 35763 | 2023-11-14 | 2023-03-29 | 2.97 | 3.20 | 2.95 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 15.12 | 0.00 | 2.214 | 9.35 | 1.85 | 3.8 | 96.2 | 0.0 | -1.84 | 0.67 | 0.78 | 2.02 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.58 | 0.00 | 2.193 | 7.73 | 3.71 | 3.5 | 96.5 | 0.0 | -0.74 | 0.39 | 0.67 | 0.77 | 1.87 | 8305 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-11-13 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6GFW | 4397 | 2023-11-19 | 2018-05-02 | 3.7 | 3.77 | — | 3.7 | 0.005 | 0.91 | 1.0 | 0.06 | 14.93 | 0.01 | 1.878 | 16.46 | 0.72 | 9.3 | 90.1 | 0.6 | -3.47 | 0.81 | 0.79 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28005 | 3545 | 9 | 104 | 49 | 0 | 0 | logfile |
✔ | 6VQW | 21359 | 2023-11-17 | 2020-02-06 | 3.42 | 4.18 | — | 4.0 | 0.010 | 0.94 | 0.0 | 0.06 | 15.46 | 0.01 | 2.245 | 7.87 | 0.57 | 13.1 | 86.9 | 0.0 | -5.04 | 0.78 | 0.79 | 1.92 | 4.0 | 0.005 | 0.67 | 0.0 | 0.04 | 16.23 | 0.00 | 2.112 | 15.66 | 0.52 | 10.9 | 89.1 | 0.0 | -2.26 | 0.46 | 0.78 | 0.78 | 1.51 | 20479 | 2648 | 11 | 40 | 0 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2023-11-19 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 15.53 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.006 | 0.85 | 0.0 | 0.05 | 16.08 | 0.00 | 1.885 | 14.15 | 0.04 | 10.8 | 88.7 | 0.6 | -1.42 | 1.79 | 0.87 | 0.82 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✘ | 7AoC | 11840 | 2023-11-20 | 2020-10-14 | 3.84 | 3.91 | — | 3.9 | 0.007 | 0.88 | 0.0 | 0.05 | 15.05 | 0.01 | 1.929 | 15.82 | 0.33 | 11.2 | 88.5 | 0.3 | -4.08 | 0.70 | 0.81 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29724 | 3746 | 17 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VN7 | 21249 | 2023-11-14 | 2020-01-29 | 3.2 | 3.53 | — | 3.7 | 0.004 | 0.90 | 0.0 | 0.07 | 8.54 | 0.01 | 2.254 | 4.22 | 0.00 | 2.8 | 97.2 | 0.0 | -2.38 | 0.66 | 0.78 | 2.53 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.106 | 8.15 | 0.44 | 2.3 | 97.7 | 0.0 | 0.87 | 0.75 | 0.56 | 0.74 | 2.05 | 8620 | 1052 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6T2V | 10370 | 2023-11-18 | 2019-10-09 | 3.8 | 4.58 | — | 3.8 | 0.002 | 0.45 | 0.0 | 0.03 | 13.03 | 0.01 | 2.213 | 4.84 | 3.02 | 2.0 | 98.0 | 0.0 | -3.62 | 0.88 | 0.73 | 0.79 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.62 | 0.00 | 2.140 | 14.75 | 0.21 | 3.5 | 96.5 | 0.0 | 0.58 | 2.38 | 0.90 | 0.80 | 0.55 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 8A7D | 15220 | 2023-11-15 | 2022-06-20 | 3.06 | 3.45 | 3.18 | 3.4 | 0.004 | 0.76 | 0.0 | 0.05 | 14.94 | 0.01 | 2.115 | 7.59 | 0.50 | 5.3 | 94.2 | 0.5 | -0.22 | 0.64 | 0.77 | 2.66 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.80 | 0.00 | 2.144 | 8.11 | 0.67 | 4.7 | 95.0 | 0.3 | 0.25 | 0.54 | 0.60 | 0.75 | 2.34 | 10771 | 1361 | 5 | 0 | 17 | 0 | 0 | logfile |
✔ | 6ZMS | 11300 | 2023-11-15 | 2020-07-03 | 3.4 | 3.78 | — | 3.8 | 0.019 | 1.98 | 3.0 | 0.10 | 14.13 | 0.01 | 2.427 | 0.32 | 2.12 | 5.6 | 91.4 | 3.0 | -2.88 | 0.40 | 0.72 | 1.84 | 3.7 | 0.004 | 0.64 | 0.0 | 0.04 | 15.70 | 0.00 | 2.031 | 5.57 | 0.14 | 6.2 | 93.4 | 0.4 | -1.93 | 1.76 | 0.35 | 0.84 | 3.57 | 12570 | 818 | 4 | 0 | 0 | 0 | 6173 | logfile |
✔ | 7CKB | 30384 | 2023-11-15 | 2020-07-16 | 3.24 | 3.29 | — | 3.2 | 0.008 | 0.88 | 0.0 | 0.05 | 16.33 | 0.01 | 2.160 | 6.96 | 1.05 | 4.0 | 96.0 | 0.0 | -0.87 | 0.85 | 0.88 | 2.17 | 3.2 | 0.006 | 0.72 | 0.0 | 0.05 | 17.10 | 0.00 | 2.145 | 7.26 | 1.43 | 2.5 | 97.5 | 0.0 | -0.14 | 0.28 | 0.85 | 0.90 | 2.74 | 114840 | 15840 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TS0 | 26104 | 2023-11-14 | 2022-01-31 | 2.8 | 3.02 | — | 3.1 | 0.004 | 0.79 | 0.0 | 0.05 | 8.38 | 0.01 | 2.273 | 3.92 | 0.10 | 1.5 | 98.5 | 0.0 | -1.24 | 0.66 | 0.80 | 2.15 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 15.45 | 0.00 | 2.073 | 6.94 | 2.05 | 2.2 | 97.8 | 0.0 | 1.52 | 1.63 | 0.62 | 0.84 | 2.85 | 9383 | 1186 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LQM | 0948 | 2023-11-20 | 2020-01-14 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139464 | 7108 | 53 | 3808 | 251 | 0 | 0 | logfile |
✔ | 7UAE | 26422 | 2023-11-13 | 2022-03-12 | 2.6 | 2.71 | 2.62 | 2.3 | 0.012 | 1.76 | 2.0 | 0.10 | 12.76 | 0.02 | 2.282 | 0.11 | 0.00 | 3.9 | 96.1 | 0.0 | -0.18 | 0.66 | 0.87 | 6.01 | 2.3 | 0.003 | 0.70 | 0.0 | 0.04 | 16.00 | 0.00 | 2.188 | 7.54 | 1.68 | 5.4 | 94.6 | 0.0 | 0.27 | 1.66 | 0.68 | 0.89 | 4.14 | 4513 | 535 | 7 | 0 | 18 | 0 | 0 | logfile |
✔ | 7ANZ | 11835 | 2023-11-16 | 2020-10-13 | 3.6 | 2.50 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.05 | 15.89 | 0.00 | 2.277 | 4.54 | 0.31 | 6.5 | 93.4 | 0.2 | -5.88 | 0.77 | 0.74 | 1.50 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 17.57 | 0.00 | 2.104 | 10.67 | 0.52 | 6.5 | 93.5 | 0.0 | -0.61 | 0.66 | 0.78 | 0.76 | 1.10 | 16751 | 2041 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-11-14 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R9B | 4769 | 2023-11-19 | 2019-04-03 | 3.8 | 3.76 | — | 3.6 | 0.003 | 0.88 | 1.0 | 0.06 | 9.76 | 0.01 | 2.296 | 4.54 | 0.70 | 8.0 | 91.8 | 0.2 | -4.57 | 0.63 | 0.51 | 0.46 | 3.7 | 0.004 | 0.85 | 0.0 | 0.05 | 15.31 | 0.00 | 2.124 | 14.93 | 0.70 | 9.8 | 90.1 | 0.1 | -2.04 | 1.63 | 0.70 | 0.61 | 0.99 | 25880 | 3401 | 7 | 0 | 0 | 0 | 0 | logfile |