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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oDJ | 20021 | 2023-11-19 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 8EET | 28057 | 2023-11-13 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.28 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.69 | 0.0 | 0.32 | 14.46 | 0.00 | 0.378 | 13.19 | 0.11 | 1.1 | 98.9 | 0.0 | 2.07 | 1.31 | 0.68 | 0.83 | 2.96 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6HJP | 0235 | 2023-11-18 | 2018-09-04 | 3.3 | 3.74 | 3.29 | 3.5 | 0.008 | 1.17 | 9.0 | 0.09 | 11.65 | 0.02 | 2.158 | 3.91 | 2.40 | 7.9 | 91.9 | 0.2 | -2.34 | 0.88 | 0.90 | 3.43 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 13.89 | 0.00 | 2.067 | 6.05 | 0.34 | 4.8 | 95.2 | 0.0 | 0.10 | 0.63 | 0.87 | 0.89 | 2.88 | 22134 | 2784 | 30 | 0 | 51 | 0 | 0 | logfile |
✔ | 6XS6 | 22301 | 2023-11-17 | 2020-07-15 | 3.7 | 2.21 | — | 2.2 | 0.004 | 0.83 | 0.0 | 0.05 | 14.26 | 0.01 | 2.240 | 4.49 | 0.00 | 6.1 | 93.9 | 0.0 | -1.99 | 0.57 | 0.59 | 2.30 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.160 | 8.43 | 0.15 | 5.1 | 94.9 | 0.0 | -0.95 | 0.37 | 0.57 | 0.59 | 2.19 | 18294 | 2357 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y3G | 33594 | 2023-11-14 | 2022-06-10 | 2.77 | 2.32 | 2.89 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 16.44 | 0.01 | 2.029 | 7.02 | 3.04 | 3.9 | 96.1 | 0.0 | 0.49 | 0.79 | 0.81 | 2.50 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 16.74 | 0.00 | 2.080 | 5.55 | 3.28 | 3.4 | 96.6 | 0.0 | 0.84 | 1.16 | 0.80 | 0.82 | 1.90 | 7864 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KKK | 22907 | 2023-11-13 | 2020-10-27 | 3.03 | 3.38 | 3.82 | 3.3 | 0.021 | 1.74 | 3.0 | 0.12 | 10.44 | 0.01 | 2.364 | 0.75 | 0.21 | 1.8 | 98.2 | 0.0 | 0.60 | 0.63 | 0.82 | 3.30 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 14.50 | 0.00 | 1.873 | 4.96 | 0.28 | 1.9 | 98.1 | 0.0 | 0.57 | 1.49 | 0.62 | 0.84 | 3.19 | 52320 | 3360 | 21 | 0 | 54 | 0 | 25449 | logfile |
✔ | 6HJN | 0234 | 2023-11-15 | 2018-09-04 | 3.3 | 3.88 | 3.28 | 3.6 | 0.008 | 1.23 | 3.0 | 0.11 | 12.09 | 0.02 | 1.734 | 5.04 | 2.80 | 8.9 | 91.1 | 0.0 | -3.22 | 0.91 | 0.91 | 4.09 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 14.00 | 0.00 | 2.096 | 6.24 | 0.16 | 8.3 | 91.7 | 0.0 | -0.32 | 0.55 | 0.89 | 0.89 | 3.27 | 12309 | 1488 | 24 | 0 | 48 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2023-11-21 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 22.38 | 0.01 | 1.977 | 27.31 | 0.56 | 5.6 | 94.4 | 0.0 | -0.80 | 1.62 | 0.60 | 0.30 | 0.49 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✔ | 6X6K | 22076 | 2023-11-14 | 2020-05-28 | 3.1 | 3.22 | — | 3.2 | 0.011 | 1.23 | 2.0 | 0.07 | 13.77 | 0.01 | 2.210 | 8.21 | 0.00 | 5.5 | 94.5 | 0.0 | -1.94 | 0.69 | 0.84 | 2.88 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 16.58 | 0.00 | 2.126 | 16.02 | 0.31 | 5.4 | 94.6 | 0.0 | -0.16 | 0.63 | 0.70 | 0.85 | 2.39 | 60970 | 7602 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2023-11-21 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 8FNE | 29310 | 2023-11-21 | 2022-12-27 | 3.9 | 4.66 | — | 4.1 | 0.018 | 1.78 | 0.0 | 0.10 | 11.33 | 0.01 | 2.452 | 0.27 | 0.00 | 1.0 | 99.0 | 0.0 | 0.31 | 0.56 | 0.44 | 0.56 | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.08 | 0.00 | 2.013 | 16.03 | 0.50 | 4.3 | 95.7 | 0.0 | -0.12 | 1.83 | 0.66 | 0.72 | 0.71 | 33508 | 2148 | 8 | 0 | 0 | 0 | 16644 | logfile |
✔ | 6Z1U | 11040 | 2023-11-15 | 2020-05-14 | 3.47 | 3.57 | 3.25 | 3.5 | 0.008 | 0.74 | 0.0 | 0.05 | 14.81 | 0.00 | 1.905 | 11.83 | 0.00 | 8.9 | 91.1 | 0.0 | -1.62 | 0.68 | 0.83 | 2.33 | 3.5 | 0.006 | 0.58 | 0.0 | 0.04 | 15.72 | 0.00 | 1.662 | 9.48 | 0.06 | 6.5 | 93.5 | 0.0 | -0.44 | 0.37 | 0.68 | 0.85 | 2.15 | 65073 | 4239 | 32 | 0 | 11 | 17 | 32803 | logfile |
✔ | 6Z1R | 11039 | 2023-11-15 | 2020-05-14 | 3.29 | 3.42 | 3.09 | 3.3 | 0.007 | 0.71 | 0.0 | 0.04 | 15.07 | 0.00 | 1.890 | 9.22 | 0.00 | 6.6 | 93.4 | 0.0 | -1.25 | 0.69 | 0.83 | 2.88 | 3.3 | 0.005 | 0.57 | 0.0 | 0.04 | 16.00 | 0.00 | 1.691 | 7.88 | 0.09 | 5.2 | 94.8 | 0.0 | 0.03 | 1.54 | 0.70 | 0.86 | 2.49 | 65754 | 4278 | 32 | 0 | 11 | 17 | 33137 | logfile |
✔ | 7YNP | 33968 | 2023-11-13 | 2022-07-31 | 2.8 | 2.38 | 2.15 | 3.4 | 0.012 | 0.97 | 0.0 | 0.06 | 13.69 | 0.00 | 2.265 | 10.48 | 0.00 | 6.5 | 93.5 | 0.0 | -3.88 | 0.39 | 0.78 | 4.28 | 3.5 | 0.005 | 0.54 | 0.0 | 0.05 | 14.75 | 0.00 | 2.231 | 7.81 | 2.71 | 5.4 | 94.6 | 0.0 | -2.18 | 1.78 | 0.34 | 0.80 | 4.85 | 2568 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-11-19 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HJQ | 0236 | 2023-11-18 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.006 | 0.94 | 0.0 | 0.06 | 10.07 | 0.01 | 1.406 | 4.81 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 11.52 | 0.00 | 2.000 | 9.92 | 0.00 | 5.4 | 94.6 | 0.0 | -0.55 | 1.66 | 0.83 | 0.87 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✔ | 8A8V | 15241 | 2023-11-19 | 2022-06-24 | 3.34 | 3.62 | 3.37 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 15.57 | 0.01 | 2.208 | 8.03 | 0.11 | 3.5 | 96.5 | 0.0 | -0.58 | 0.75 | 0.79 | 1.81 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.86 | 0.00 | 2.175 | 11.46 | 0.35 | 3.2 | 96.8 | 0.0 | 0.71 | 0.42 | 0.76 | 0.83 | 1.53 | 27164 | 3396 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 7T9i | 25758 | 2023-11-18 | 2021-12-19 | 2.9 | 2.43 | — | 1.9 | 0.005 | 0.91 | 1.0 | 0.05 | 12.76 | 0.01 | 2.016 | 3.30 | 0.62 | 3.6 | 96.4 | 0.0 | -0.16 | 0.69 | 0.63 | 2.32 | 1.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.11 | 0.00 | 1.904 | 9.43 | 2.50 | 6.3 | 93.7 | 0.0 | -0.52 | 1.14 | 0.74 | 0.72 | 2.51 | 23529 | 1532 | 11 | 0 | 8 | 0 | 11557 | logfile |
✔ | 6ZBB | 11149 | 2023-11-18 | 2020-06-08 | 3.61 | 3.81 | 3.50 | 3.7 | 0.008 | 1.03 | 0.0 | 0.04 | 16.61 | 0.00 | 1.960 | 16.56 | 0.00 | 6.1 | 93.9 | 0.0 | -0.21 | 0.64 | 0.79 | 1.49 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 16.31 | 0.00 | 1.994 | 15.86 | 0.96 | 3.7 | 96.3 | 0.0 | 1.11 | 0.55 | 0.64 | 0.79 | 1.22 | 20936 | 1328 | 20 | 0 | 5 | 0 | 10446 | logfile |
✔ | 7WV4 | 32845 | 2023-11-18 | 2022-02-09 | 3.35 | 3.68 | — | 3.6 | 0.014 | 1.48 | 0.0 | 0.04 | 18.99 | 0.08 | 2.227 | 7.60 | 0.00 | 4.6 | 95.4 | 0.0 | -1.40 | 0.79 | 0.76 | 2.07 | 3.4 | 0.006 | 1.76 | 0.0 | 0.05 | 20.13 | 0.02 | 2.109 | 19.25 | 0.20 | 9.1 | 90.9 | 0.0 | -2.03 | 0.94 | 0.81 | 0.81 | 2.15 | 24490 | 2636 | 6 | 80 | 80 | 0 | 0 | logfile |