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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2023-12-07 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 15.76 | 0.00 | 2.243 | 15.40 | 0.00 | 10.0 | 88.8 | 1.2 | -1.46 | 2.97 | 0.22 | 0.61 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7CHH | 30374 | 2023-12-14 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.006 | 0.97 | 0.0 | 0.05 | 16.00 | 0.01 | 1.976 | 19.50 | 0.51 | 7.7 | 92.3 | 0.0 | -2.05 | 1.50 | 0.22 | 0.15 | 0.50 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2023-12-09 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.14 | 2.0 | 0.05 | 15.52 | 0.01 | 1.979 | 19.61 | 0.00 | 18.6 | 79.9 | 1.4 | -3.48 | 1.34 | 0.19 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-12-11 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.002 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.157 | 11.05 | 0.15 | 4.6 | 95.4 | 0.0 | -0.07 | 1.51 | 0.27 | 0.13 | 0.29 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-12-12 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2023-12-09 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 20.10 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.007 | 1.00 | 0.0 | 0.05 | 22.86 | 0.01 | 2.032 | 23.12 | 0.76 | 12.5 | 86.2 | 1.3 | -2.59 | 1.90 | 0.23 | 0.64 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2023-12-10 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 21.29 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 20.11 | 0.00 | 2.135 | 7.12 | 0.54 | 3.8 | 96.2 | 0.0 | -0.25 | 0.70 | 0.21 | 0.84 | 2.98 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 8B6Z | 15893 | 2023-12-07 | 2022-09-27 | 2.9 | 3.26 | 3.37 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 11.87 | 0.00 | 2.286 | 0.59 | 0.27 | 1.4 | 98.6 | 0.0 | -0.69 | 0.20 | 0.56 | 1.62 | 2.8 | 0.004 | 0.74 | 0.0 | 0.05 | 15.25 | 0.01 | 2.147 | 8.53 | 0.80 | 3.9 | 96.1 | 0.0 | -0.31 | 1.07 | 0.23 | 0.77 | 2.01 | 3581 | 442 | 2 | 8 | 0 | 0 | 0 | logfile |
✔ | 8ACC | 15346 | 2023-12-07 | 2022-07-05 | 2.9 | 3.30 | 2.80 | 3.3 | 0.002 | 0.70 | 0.0 | 0.05 | 12.05 | 0.00 | 2.200 | 6.25 | 0.00 | 11.4 | 86.5 | 2.2 | -2.46 | 0.20 | 0.81 | 4.38 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.85 | 0.00 | 2.244 | 8.63 | 4.61 | 12.7 | 86.5 | 0.9 | -1.63 | 0.68 | 0.20 | 0.83 | 3.15 | 1779 | 231 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 8Q27 | 18070 | 2023-12-08 | 2023-08-01 | 2.02 | 1.98 | 1.92 | 2.0 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.3 | 97.7 | 0.0 | -1.63 | 0.21 | 0.69 | 8.02 | 2.0 | 0.002 | 0.56 | 0.0 | 0.05 | 17.05 | 0.00 | 2.209 | 1.86 | 0.00 | 2.9 | 97.1 | 0.0 | -1.35 | 1.20 | 0.34 | 0.88 | 7.27 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 7X34 | 32978 | 2023-12-07 | 2022-02-27 | 3.1 | 5.47 | 3.73 | 3.1 | 0.009 | 1.17 | 0.0 | 0.05 | 23.93 | 0.01 | 2.316 | 5.71 | 0.00 | 3.1 | 96.9 | 0.0 | -2.86 | 0.21 | 0.78 | 1.18 | 3.2 | 0.005 | 0.86 | 0.0 | 0.04 | 24.93 | 0.01 | 2.062 | 38.64 | 0.00 | 4.1 | 95.9 | 0.0 | 0.11 | 0.73 | 0.21 | 0.78 | 1.18 | 2762 | 100 | 2 | 94 | 0 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-12-07 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 19.16 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.004 | 1.12 | 0.0 | 0.04 | 20.40 | 0.00 | 2.242 | 13.44 | 2.67 | 7.5 | 92.5 | 0.0 | -1.69 | 0.95 | 0.21 | 0.65 | 0.67 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 8ACB | 15345 | 2023-12-07 | 2022-07-05 | 2.6 | 2.88 | 1.65 | 2.9 | 0.004 | 0.71 | 0.0 | 0.08 | 13.94 | 0.00 | 2.257 | 7.47 | 0.00 | 7.8 | 92.2 | 0.0 | -0.81 | 0.21 | 0.81 | 4.10 | 2.9 | 0.002 | 0.55 | 0.0 | 0.04 | 17.52 | 0.00 | 2.192 | 6.89 | 1.70 | 7.8 | 92.2 | 0.0 | -0.42 | 1.25 | 0.20 | 0.83 | 3.65 | 1815 | 220 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 7TMC | 25995 | 2023-12-07 | 2022-01-19 | 3.25 | 3.24 | 2.95 | 4.2 | 0.005 | 0.72 | 0.0 | 0.07 | 18.02 | 0.01 | 2.152 | 13.78 | 0.00 | 9.5 | 90.5 | 0.0 | -4.08 | 0.21 | 0.31 | -0.39 | 3.5 | 0.004 | 0.86 | 0.0 | 0.07 | 15.93 | 0.01 | 2.160 | 18.47 | 0.26 | 11.5 | 88.5 | 0.0 | -4.08 | 1.96 | 0.35 | 0.75 | 2.88 | 3426 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8Q8C | 18250 | 2023-12-08 | 2023-08-18 | 1.92 | 1.98 | 1.90 | 2.0 | 0.011 | 1.66 | 0.0 | 0.08 | 10.69 | 0.01 | 2.505 | 0.00 | 0.27 | 1.2 | 98.8 | 0.0 | -1.44 | 0.21 | 0.65 | 7.52 | 1.9 | 0.004 | 0.59 | 0.0 | 0.05 | 16.37 | 0.00 | 2.146 | 1.97 | 0.54 | 1.7 | 98.3 | 0.0 | -1.10 | 1.98 | 0.39 | 0.90 | 7.85 | 6618 | 429 | 6 | 0 | 0 | 0 | 3372 | logfile |
✔ | 3JBS | 6478 | 2023-12-07 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-12-12 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.01 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.80 | 1.0 | 0.04 | 23.65 | 0.01 | 1.997 | 23.23 | 0.26 | 9.0 | 90.6 | 0.4 | -2.58 | 1.95 | 0.33 | 0.24 | 0.04 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2023-12-16 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.16 | 0.01 | 1.681 | 9.40 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.004 | 0.79 | 0.0 | 0.05 | 14.00 | 0.00 | 1.916 | 19.81 | 0.03 | 6.6 | 93.3 | 0.1 | -1.86 | 1.06 | 0.26 | 0.18 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-12-07 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-12-07 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.71 | 0.0 | 0.03 | 16.08 | 0.00 | 2.061 | 8.55 | 1.01 | 6.2 | 93.8 | 0.0 | -1.13 | 1.35 | 0.28 | 0.06 | -0.23 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |