The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J79 | 2660 | 2023-12-11 | 2014-06-02 | 3.2 | 3.25 | 3.13 | 3.2 | 0.007 | 1.31 | 43.0 | 0.10 | 23.51 | 0.01 | 1.505 | 4.40 | 11.66 | 7.2 | 90.4 | 2.4 | -1.45 | 0.53 | 0.71 | 0.94 | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 22.06 | 0.01 | 1.830 | 13.85 | 1.04 | 6.2 | 93.3 | 0.5 | -0.44 | 0.96 | 0.65 | 0.86 | 1.78 | 124514 | 6244 | 55 | 3460 | 168 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2023-12-11 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 23.37 | 0.01 | 1.715 | 4.56 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.003 | 0.65 | 0.0 | 0.03 | 21.78 | 0.01 | 1.942 | 15.57 | 0.50 | 7.3 | 91.5 | 1.1 | -1.51 | 2.73 | 0.39 | 0.76 | 0.92 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-12-14 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 3J7H | 5995 | 2023-12-15 | 2014-06-30 | 3.2 | 2.58 | 3.45 | 3.4 | 0.005 | 1.17 | 0.0 | 0.06 | 17.98 | 0.01 | 1.085 | 132.80 | 12.24 | 2.5 | 97.4 | 0.2 | 2.39 | 0.77 | 0.79 | 2.04 | 3.4 | 0.006 | 0.81 | 0.0 | 0.05 | 17.42 | 0.00 | 1.990 | 15.82 | 0.89 | 3.9 | 96.1 | 0.0 | -0.35 | 1.64 | 0.79 | 0.87 | 2.62 | 32828 | 4088 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J7Y | 2762 | 2023-12-15 | 2014-08-26 | 3.4 | 3.45 | — | 3.4 | 0.008 | 1.34 | 31.0 | 0.10 | 22.52 | 0.01 | 1.708 | 8.61 | 8.93 | 7.9 | 89.9 | 2.2 | -1.78 | 0.72 | 0.83 | 2.09 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 21.35 | 0.01 | 1.835 | 11.96 | 0.72 | 7.1 | 92.3 | 0.7 | -0.38 | 3.10 | 0.75 | 0.84 | 1.94 | 94121 | 7469 | 56 | 1530 | 208 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2023-12-15 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.09 | 23.08 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.007 | 0.94 | 0.0 | 0.05 | 22.93 | 0.01 | 1.990 | 20.07 | 1.47 | 14.6 | 83.3 | 2.0 | -3.41 | 1.88 | 0.80 | 0.81 | 0.92 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 3J80 | 2764 | 2023-12-13 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 25.36 | 0.01 | 1.747 | 9.35 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.005 | 0.83 | 0.0 | 0.04 | 23.93 | 0.01 | 1.743 | 24.24 | 1.17 | 12.1 | 86.4 | 1.4 | -1.98 | 1.63 | 0.78 | 0.82 | 0.73 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2023-12-15 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 22.70 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.006 | 0.74 | 0.0 | 0.04 | 23.28 | 0.01 | 1.582 | 65.81 | 2.78 | 18.2 | 79.6 | 2.2 | -3.64 | 1.59 | 0.58 | 0.80 | 1.06 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 3J81 | 2763 | 2023-12-14 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 25.18 | 0.01 | 1.076 | 7.72 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.005 | 0.82 | 0.0 | 0.04 | 24.12 | 0.01 | 1.762 | 25.48 | 0.98 | 11.6 | 86.9 | 1.5 | -1.98 | 2.08 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2023-12-11 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 23.04 | 0.05 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 1.03 | 0.0 | 0.04 | 22.32 | 0.01 | 1.075 | 9.12 | 0.47 | 3.9 | 96.0 | 0.1 | -0.26 | 1.52 | 0.76 | 0.88 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2023-12-15 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.17 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 16.87 | 0.00 | 2.083 | 10.94 | 0.29 | 4.4 | 95.5 | 0.1 | 0.59 | 1.92 | 0.38 | 0.79 | 1.76 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2023-12-15 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.004 | 0.91 | 0.0 | 0.04 | 16.60 | 0.01 | 2.039 | 20.50 | 0.00 | 2.4 | 97.6 | 0.0 | 0.57 | 2.81 | 0.73 | 0.76 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2023-12-08 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.004 | 0.53 | 0.0 | 0.03 | 20.53 | 0.00 | 2.099 | 9.53 | 1.50 | 1.4 | 98.6 | 0.0 | 2.80 | 1.98 | 0.81 | 0.79 | 0.39 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 3J8A | 6124 | 2023-12-10 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.27 | 0.0 | 0.05 | 14.88 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | 3.8 | 0.005 | 0.85 | 0.0 | 0.05 | 16.48 | 0.00 | 1.896 | 16.54 | 1.49 | 7.6 | 91.5 | 0.8 | -2.43 | 1.23 | 0.72 | 0.83 | 1.71 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-12-08 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2023-12-10 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.92 | 0.0 | 0.04 | 14.37 | 0.00 | 2.050 | 17.08 | 0.00 | 11.4 | 88.1 | 0.5 | -1.97 | 1.76 | 0.64 | 0.70 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2023-12-12 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.97 | 0.0 | 0.07 | 17.14 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.6 | 0.003 | 0.78 | 0.0 | 0.04 | 14.66 | 0.00 | 1.741 | 16.33 | 0.00 | 4.7 | 94.8 | 0.5 | 0.72 | 2.61 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2023-12-13 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 2.277 | 7.02 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.74 | 0.87 | 2.67 | 3.0 | 0.004 | 0.61 | 0.0 | 0.05 | 16.49 | 0.00 | 2.143 | 7.80 | 3.35 | 3.0 | 97.0 | 0.0 | 0.21 | 1.52 | 0.76 | 0.87 | 3.18 | 23296 | 2961 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2023-12-08 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.197 | 15.77 | 0.60 | 7.4 | 91.9 | 0.7 | -1.61 | 2.37 | 0.75 | 0.84 | 2.85 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2023-12-07 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.78 | 0.0 | 0.04 | 17.71 | 0.00 | 2.103 | 10.58 | 0.46 | 7.9 | 91.5 | 0.6 | 0.80 | 1.24 | 0.72 | 0.85 | 3.33 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |