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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D8Q | 27254 | 2023-12-07 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.02 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.148 | 13.21 | 0.18 | 5.3 | 94.7 | 0.0 | -0.63 | 1.03 | 0.67 | 0.76 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RDX | 4834 | 2023-12-07 | 2019-04-12 | 3.9 | 3.93 | 3.89 | 3.9 | 0.010 | 1.05 | 0.0 | 0.06 | 15.09 | 0.01 | 2.050 | 6.72 | 0.55 | 5.8 | 94.0 | 0.2 | -4.32 | 0.63 | 0.79 | 1.46 | 3.9 | 0.005 | 0.76 | 0.0 | 0.05 | 16.72 | 0.00 | 1.843 | 15.94 | 0.67 | 5.4 | 94.4 | 0.1 | -0.65 | 1.25 | 0.64 | 0.82 | 1.16 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6REB | 4848 | 2023-12-07 | 2019-04-12 | 3.2 | 3.24 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.40 | 0.37 | 4.8 | 95.1 | 0.1 | -3.95 | 0.70 | 0.84 | 3.18 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.72 | 0.00 | 1.942 | 9.70 | 0.27 | 3.8 | 96.1 | 0.1 | -0.06 | 1.56 | 0.71 | 0.87 | 2.58 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6REE | 4851 | 2023-12-07 | 2019-04-12 | 3.1 | 3.13 | — | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 14.21 | 0.01 | 2.220 | 5.17 | 0.14 | 4.4 | 95.5 | 0.1 | -3.82 | 0.71 | 0.83 | 2.80 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.75 | 0.00 | 1.939 | 9.21 | 0.21 | 3.7 | 96.2 | 0.1 | 0.31 | 0.52 | 0.72 | 0.86 | 2.28 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8EET | 28057 | 2023-12-07 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.42 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.68 | 0.0 | 0.26 | 21.44 | 0.00 | 0.591 | 11.72 | 0.12 | 1.0 | 99.0 | 0.0 | 2.41 | 1.30 | 0.66 | 0.80 | 2.54 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7TPK | 26058 | 2023-12-07 | 2022-01-25 | 3.4 | 3.41 | — | 3.4 | 0.011 | 1.40 | 1.0 | 0.08 | 9.83 | 0.01 | 2.528 | 2.12 | 0.00 | 4.7 | 95.3 | 0.0 | -0.98 | 0.60 | 0.72 | 4.39 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 14.41 | 0.00 | 2.320 | 4.24 | 0.00 | 3.6 | 96.4 | 0.0 | -1.50 | 1.24 | 0.65 | 0.81 | 3.33 | 1484 | 194 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KKK | 22907 | 2023-12-07 | 2020-10-27 | 3.03 | 3.38 | 3.82 | 3.3 | 0.021 | 1.74 | 3.0 | 0.12 | 10.11 | 0.01 | 2.364 | 0.75 | 0.21 | 1.8 | 98.2 | 0.0 | 0.60 | 0.63 | 0.82 | 3.30 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 13.89 | 0.00 | 1.864 | 5.34 | 0.24 | 2.5 | 97.5 | 0.0 | 0.45 | 1.49 | 0.62 | 0.85 | 3.24 | 52320 | 3360 | 21 | 0 | 54 | 0 | 25449 | logfile |
✔ | 6W1N | 21513 | 2023-12-07 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.15 | 0.00 | 2.112 | 11.82 | 0.29 | 2.8 | 97.2 | 0.0 | 0.86 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 7XRP | 33416 | 2023-12-07 | 2022-05-11 | 3.88 | 4.07 | 3.83 | 4.0 | 0.008 | 1.14 | 0.0 | 0.08 | 14.36 | 0.02 | 2.261 | 4.57 | 0.45 | 8.4 | 91.6 | 0.0 | -4.63 | 0.53 | 0.80 | 2.30 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 15.93 | 0.00 | 2.175 | 14.21 | 0.45 | 7.4 | 92.6 | 0.0 | -2.97 | 0.69 | 0.53 | 0.80 | 1.99 | 4129 | 515 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2023-12-07 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 13.99 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.038 | 3.42 | 10.0 | 0.29 | 25.44 | 0.01 | 0.460 | 10.66 | 1.28 | 1.5 | 98.5 | 0.0 | 1.89 | 1.11 | 0.69 | 0.81 | 2.66 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7YNP | 33968 | 2023-12-07 | 2022-07-31 | 2.8 | 2.38 | 2.15 | 3.4 | 0.012 | 0.97 | 0.0 | 0.06 | 13.69 | 0.00 | 2.265 | 10.48 | 0.00 | 6.5 | 93.5 | 0.0 | -3.88 | 0.39 | 0.78 | 4.28 | 3.5 | 0.005 | 0.54 | 0.0 | 0.05 | 14.75 | 0.00 | 2.231 | 7.81 | 2.71 | 5.4 | 94.6 | 0.0 | -2.18 | 1.78 | 0.34 | 0.80 | 4.85 | 2568 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RE6 | 4843 | 2023-12-07 | 2019-04-12 | 3.4 | 3.45 | 3.43 | 3.4 | 0.010 | 0.94 | 0.0 | 0.06 | 14.50 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.65 | 0.77 | 2.31 | 3.4 | 0.004 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 1.925 | 11.23 | 0.28 | 4.3 | 95.5 | 0.1 | -0.07 | 0.64 | 0.68 | 0.84 | 1.99 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7WS7 | 32749 | 2023-12-07 | 2022-01-28 | 3.4 | 3.83 | — | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 14.98 | 0.00 | 1.820 | 9.34 | 0.00 | 5.1 | 94.9 | 0.0 | -1.78 | 0.71 | 0.84 | 3.63 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.65 | 0.00 | 2.115 | 10.23 | 0.18 | 4.1 | 95.9 | 0.0 | -1.24 | 0.95 | 0.70 | 0.87 | 3.17 | 5209 | 671 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RE5 | 4842 | 2023-12-07 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.50 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.84 | 0.00 | 1.971 | 9.68 | 0.18 | 3.3 | 96.6 | 0.1 | 0.23 | 0.46 | 0.71 | 0.86 | 2.15 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7SoD | 25267 | 2023-12-07 | 2021-10-29 | 3.2 | 3.43 | 3.21 | 3.4 | 0.011 | 1.24 | 0.0 | 0.08 | 9.17 | 0.01 | 2.129 | 0.40 | 0.49 | 2.4 | 97.6 | 0.0 | 1.01 | 0.70 | 0.86 | 5.20 | 3.4 | 0.004 | 0.57 | 0.0 | 0.04 | 12.35 | 0.00 | 2.285 | 4.00 | 0.25 | 3.3 | 96.7 | 0.0 | 1.02 | 1.29 | 0.69 | 0.91 | 5.44 | 3830 | 473 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7SoF | 25269 | 2023-12-07 | 2021-10-29 | 3.6 | 3.79 | 3.59 | 3.8 | 0.010 | 1.31 | 1.0 | 0.08 | 8.43 | 0.01 | 2.563 | 1.12 | 0.00 | 3.4 | 96.6 | 0.0 | 0.64 | 0.67 | 0.78 | 4.10 | 3.8 | 0.004 | 0.67 | 0.0 | 0.05 | 12.74 | 0.00 | 2.156 | 6.31 | 0.29 | 4.4 | 95.6 | 0.0 | -0.16 | 1.38 | 0.69 | 0.82 | 3.69 | 3735 | 488 | 5 | 0 | 9 | 0 | 0 | logfile |
✔ | 8ERQ | 28558 | 2023-12-07 | 2022-10-12 | 3.3 | 3.48 | 3.22 | 3.5 | 0.010 | 1.32 | 0.0 | 0.07 | 10.04 | 0.01 | 2.265 | 2.12 | 0.95 | 3.8 | 96.2 | 0.0 | 0.38 | 0.63 | 0.76 | 4.07 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.65 | 0.00 | 2.273 | 3.92 | 0.32 | 2.9 | 97.1 | 0.0 | -0.10 | 0.99 | 0.64 | 0.83 | 3.52 | 3178 | 423 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2023-12-07 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-12-07 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |