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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PC2 | 13316 | 2023-12-14 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 14.98 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.006 | 1.21 | 1.0 | 0.06 | 16.57 | 0.01 | 2.019 | 22.73 | 3.99 | 9.2 | 90.8 | 0.0 | -2.30 | 2.15 | 0.68 | 0.64 | 1.37 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-12-12 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2023-12-13 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 20.08 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 21.63 | 0.00 | 1.991 | 7.57 | 3.86 | 4.5 | 95.4 | 0.2 | 2.72 | 1.42 | 0.22 | 0.79 | 1.65 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-12-07 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-12-09 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.57 | 0.0 | 0.03 | 16.19 | 0.00 | 2.253 | 11.37 | 0.00 | 1.7 | 98.3 | 0.0 | 4.14 | 1.16 | 0.69 | 0.71 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✘ | 6UMM | 20820 | 2023-12-13 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2023-12-07 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.36 | 3.0 | 0.12 | 9.73 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 16.40 | 0.00 | 2.267 | 9.91 | 2.37 | 3.8 | 96.2 | 0.0 | 0.48 | 2.43 | 0.69 | 0.83 | 3.55 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-12-11 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 19.81 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.006 | 0.96 | 0.0 | 0.05 | 24.08 | 0.01 | 1.933 | 41.33 | 1.13 | 22.9 | 75.6 | 1.5 | -5.20 | 2.35 | 0.80 | 0.66 | 0.65 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 8EDL | 28035 | 2023-12-07 | 2022-09-05 | 3.7 | 3.30 | 3.60 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 11.07 | 0.00 | 2.307 | 6.09 | 0.00 | 2.1 | 97.7 | 0.3 | 2.83 | 0.62 | 0.61 | -0.09 | 3.1 | 0.002 | 0.56 | 0.0 | 0.03 | 13.69 | 0.00 | 2.346 | 6.09 | 0.00 | 3.1 | 96.9 | 0.0 | 3.49 | 1.16 | 0.68 | 0.73 | 2.92 | 2470 | 395 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MPP | 3538 | 2023-12-12 | 2016-12-17 | 3.9 | 4.03 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 14.77 | 0.01 | 2.456 | 7.21 | 5.00 | 5.3 | 94.7 | 0.0 | -3.86 | 0.58 | 0.49 | -0.06 | 4.0 | 0.005 | 0.80 | 0.0 | 0.05 | 17.63 | 0.00 | 2.099 | 14.65 | 1.10 | 4.5 | 95.5 | 0.0 | 0.11 | 3.91 | 0.82 | 0.86 | 0.81 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-12-11 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.002 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.157 | 11.05 | 0.15 | 4.6 | 95.4 | 0.0 | -0.07 | 1.51 | 0.27 | 0.13 | 0.29 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7YPi | 34001 | 2023-12-16 | 2022-08-03 | 3.8 | 4.97 | 3.95 | 3.9 | 0.007 | 1.26 | 2.0 | 0.07 | 13.34 | 0.01 | 1.737 | 14.24 | 0.13 | 6.9 | 93.1 | 0.0 | -2.94 | 0.80 | 0.59 | -0.05 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.16 | 0.00 | 2.046 | 27.26 | 0.08 | 7.0 | 93.0 | 0.0 | -1.45 | 1.33 | 0.81 | 0.62 | -0.17 | 36476 | 4638 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2023-12-08 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2023-12-12 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 18.70 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.004 | 0.88 | 0.0 | 0.05 | 18.21 | 0.01 | 2.000 | 22.95 | 0.79 | 9.8 | 89.9 | 0.3 | -2.47 | 1.91 | 0.78 | 0.65 | 0.74 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-12-08 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 14.32 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.004 | 0.78 | 0.0 | 0.04 | 15.11 | 0.00 | 1.961 | 21.82 | 0.52 | 3.3 | 96.7 | 0.0 | 0.19 | 1.50 | 0.95 | 0.86 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8HAo | 34598 | 2023-12-11 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.30 | 0.00 | 2.050 | 18.94 | 0.80 | 4.4 | 95.6 | 0.1 | 0.27 | 1.23 | 0.65 | 0.69 | 0.83 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-12-10 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 16.65 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.003 | 0.74 | 0.0 | 0.04 | 17.73 | 0.00 | 1.252 | 15.90 | 0.42 | 5.9 | 94.1 | 0.0 | -1.58 | 1.24 | 0.38 | 0.19 | 0.44 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2023-12-14 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 24.29 | 0.01 | 1.953 | 13.53 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.4 | 0.004 | 0.73 | 0.0 | 0.04 | 24.07 | 0.01 | 2.000 | 21.95 | 4.61 | 8.9 | 91.1 | 0.0 | -2.04 | 2.51 | 0.87 | 0.79 | 0.84 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2023-12-15 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 22.71 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.006 | 0.83 | 0.0 | 0.05 | 23.51 | 0.01 | 1.902 | 37.90 | 1.22 | 8.2 | 91.7 | 0.1 | -1.82 | 1.82 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2023-12-14 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 22.22 | 0.00 | 2.011 | 9.44 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.007 | 1.15 | 1.0 | 0.05 | 24.55 | 0.01 | 0.916 | 32.95 | 1.37 | 11.7 | 88.2 | 0.1 | -3.12 | 2.33 | 0.55 | 0.65 | 0.69 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |