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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✔ | 7EPP | 31248 | 2023-12-14 | 2021-04-27 | 2.4 | 2.51 | — | 2.6 | 0.004 | 0.67 | 0.0 | 0.04 | 16.13 | 0.01 | 0.073 | 3.24 | 3.57 | 7.3 | 92.7 | 0.0 | -2.99 | 0.64 | 0.81 | 3.73 | 2.6 | 0.004 | 0.73 | 0.0 | 0.05 | 16.70 | 0.01 | 2.013 | 5.31 | 1.12 | 7.3 | 92.7 | 0.0 | -1.67 | 0.53 | 0.69 | 0.85 | 3.46 | 80520 | 10020 | 60 | 0 | 0 | 1800 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-12-12 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-12-07 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.62 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2023-12-15 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 23.20 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.009 | 0.76 | 0.0 | 0.04 | 23.42 | 0.01 | 1.871 | 15.74 | 0.98 | 7.6 | 92.4 | 0.1 | -1.22 | 2.50 | 0.90 | 0.90 | 1.81 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-12-13 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 14.67 | 0.00 | 1.490 | 14.96 | 0.38 | 10.8 | 88.9 | 0.3 | -1.88 | 1.49 | 0.82 | 0.81 | 1.22 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-12-13 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 22.29 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.97 | 0.0 | 0.04 | 22.49 | 0.01 | 1.954 | 38.93 | 0.61 | 16.1 | 83.8 | 0.2 | -3.91 | 2.59 | 0.92 | 0.79 | 0.41 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-12-10 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2023-12-09 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.43 | 0.00 | 1.145 | 9.20 | 1.43 | 1.5 | 98.5 | 0.0 | 1.37 | 1.90 | 0.70 | 0.89 | 3.19 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 8PDQ | 17618 | 2023-12-16 | 2023-06-12 | 3.1 | 3.25 | 3.11 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 0.235 | 15.65 | 0.00 | 1.9 | 98.1 | 0.0 | 0.16 | 0.77 | 0.82 | 2.60 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 16.33 | 0.00 | 2.136 | 10.59 | 0.23 | 1.9 | 98.1 | 0.0 | 1.59 | 0.39 | 0.78 | 0.83 | 2.34 | 33176 | 4070 | 33 | 77 | 0 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2023-12-14 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.81 | 0.0 | 0.04 | 16.33 | 0.00 | 2.100 | 13.99 | 3.48 | 4.6 | 95.4 | 0.0 | -1.07 | 1.53 | 0.48 | 0.50 | 1.34 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-12-13 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 6ZXD | 11517 | 2023-12-14 | 2020-07-29 | 3.2 | 3.08 | 3.17 | 3.1 | 0.007 | 0.94 | 0.0 | 0.05 | 21.37 | 0.01 | 0.254 | 5.75 | 0.21 | 7.2 | 92.6 | 0.2 | -3.93 | 0.76 | 0.76 | 2.67 | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 21.53 | 0.00 | 2.041 | 8.96 | 0.43 | 5.0 | 95.0 | 0.1 | -0.97 | 1.17 | 0.77 | 0.79 | 2.11 | 80922 | 5944 | 39 | 1645 | 2 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2023-12-12 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 22.81 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 22.78 | 0.00 | 2.059 | 17.49 | 0.00 | 7.8 | 92.2 | 0.0 | -0.71 | 1.92 | 0.75 | 0.74 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 8SEW | 40431 | 2023-12-12 | 2023-04-10 | 2.89 | 2.97 | 2.87 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 0.267 | 5.77 | 2.14 | 2.1 | 97.7 | 0.2 | 1.93 | 0.60 | 0.79 | 2.44 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.35 | 0.00 | 2.215 | 6.47 | 1.20 | 1.6 | 98.2 | 0.2 | 1.93 | 0.57 | 0.61 | 0.81 | 2.28 | 20716 | 2516 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-12-15 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 23.26 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.61 | 0.0 | 0.04 | 23.17 | 0.00 | 1.861 | 11.90 | 4.56 | 6.5 | 93.5 | 0.0 | -1.85 | 0.65 | 0.77 | 0.85 | 2.12 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 8PDM | 17614 | 2023-12-15 | 2023-06-12 | 3.3 | 3.51 | 3.38 | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 15.48 | 0.01 | 0.279 | 15.39 | 0.00 | 2.0 | 98.0 | 0.0 | 0.75 | 0.75 | 0.79 | 1.66 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.12 | 0.00 | 2.149 | 10.61 | 0.34 | 2.9 | 97.1 | 0.0 | 1.42 | 1.23 | 0.77 | 0.81 | 0.90 | 31471 | 3861 | 22 | 77 | 0 | 0 | 0 | logfile |
✔ | 8EEP | 28054 | 2023-12-08 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 22.11 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.033 | 1.73 | 0.0 | 0.12 | 19.27 | 0.01 | 1.901 | 9.78 | 1.53 | 1.0 | 99.0 | 0.0 | 1.36 | 1.38 | 0.74 | 0.82 | 3.94 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 8DMG | 27536 | 2023-12-11 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.95 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 13.58 | 0.00 | 1.880 | 73.68 | 0.00 | 5.7 | 94.2 | 0.0 | 0.39 | 2.25 | 0.93 | 0.84 | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✔ | 8EET | 28057 | 2023-12-07 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.42 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.68 | 0.0 | 0.26 | 21.44 | 0.00 | 0.591 | 11.72 | 0.12 | 1.0 | 99.0 | 0.0 | 2.41 | 1.30 | 0.66 | 0.80 | 2.54 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |