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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D8Q | 27254 | 2023-12-07 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.02 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.148 | 13.21 | 0.18 | 5.3 | 94.7 | 0.0 | -0.63 | 1.03 | 0.67 | 0.76 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2023-12-13 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✘ | 7KHR | 22880 | 2023-12-09 | 2020-10-21 | 3.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61913 | 8212 | 44 | 0 | 36 | 0 | 0 | logfile |
✔ | 6HJP | 0235 | 2023-12-12 | 2018-09-04 | 3.3 | 3.74 | 3.29 | 3.5 | 0.008 | 1.17 | 9.0 | 0.09 | 11.74 | 0.02 | 2.158 | 3.91 | 2.40 | 7.9 | 91.9 | 0.2 | -2.34 | 0.88 | 0.90 | 3.43 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.70 | 0.00 | 2.069 | 6.28 | 0.04 | 5.1 | 94.9 | 0.0 | 0.02 | 0.62 | 0.87 | 0.89 | 2.87 | 22134 | 2784 | 30 | 0 | 51 | 0 | 0 | logfile |
✔ | 6XS6 | 22301 | 2023-12-11 | 2020-07-15 | 3.7 | 2.21 | — | 2.2 | 0.004 | 0.83 | 0.0 | 0.05 | 14.26 | 0.01 | 2.240 | 4.49 | 0.00 | 6.1 | 93.9 | 0.0 | -1.99 | 0.57 | 0.59 | 2.30 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.160 | 8.43 | 0.15 | 5.1 | 94.9 | 0.0 | -0.95 | 0.37 | 0.57 | 0.59 | 2.19 | 18294 | 2357 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y3G | 33594 | 2023-12-08 | 2022-06-10 | 2.77 | 2.32 | 2.89 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 16.44 | 0.01 | 2.029 | 7.02 | 3.04 | 3.9 | 96.1 | 0.0 | 0.49 | 0.79 | 0.81 | 2.50 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 16.74 | 0.00 | 2.080 | 5.55 | 3.28 | 3.4 | 96.6 | 0.0 | 0.84 | 1.16 | 0.80 | 0.82 | 1.90 | 7864 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QDW | 4531 | 2023-12-15 | 2019-01-03 | 2.83 | 2.94 | 2.82 | 2.9 | 0.013 | 1.10 | 0.0 | 0.06 | 23.77 | 0.01 | 1.901 | 6.27 | 1.25 | 7.1 | 92.7 | 0.2 | -4.19 | 0.71 | 0.83 | 2.54 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 23.44 | 0.00 | 2.053 | 10.09 | 2.97 | 5.7 | 94.3 | 0.0 | -1.11 | 1.62 | 0.77 | 0.89 | 3.11 | 90690 | 3127 | 32 | 3081 | 0 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2023-12-10 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.08 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.25 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6HJN | 0234 | 2023-12-09 | 2018-09-04 | 3.3 | 3.88 | 3.28 | 3.6 | 0.008 | 1.23 | 3.0 | 0.11 | 12.01 | 0.02 | 1.734 | 5.04 | 2.80 | 8.9 | 91.1 | 0.0 | -3.22 | 0.91 | 0.91 | 4.09 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 13.79 | 0.00 | 2.089 | 6.37 | 0.31 | 8.5 | 91.5 | 0.0 | -0.28 | 0.56 | 0.89 | 0.90 | 3.28 | 12309 | 1488 | 24 | 0 | 48 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2023-12-16 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.18 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 9.2 | 0.003 | 0.78 | 0.0 | 0.04 | 22.39 | 0.00 | 2.092 | 20.56 | 0.47 | 4.4 | 95.6 | 0.0 | -0.48 | 1.61 | 0.60 | 0.28 | 0.53 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2023-12-07 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 13.99 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.038 | 3.42 | 10.0 | 0.29 | 25.44 | 0.01 | 0.460 | 10.66 | 1.28 | 1.5 | 98.5 | 0.0 | 1.89 | 1.11 | 0.69 | 0.81 | 2.66 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6QC3 | 4495 | 2023-12-16 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.22 | 0.01 | 1.873 | 8.18 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | 4.2 | 0.008 | 1.50 | 0.0 | 0.26 | 13.55 | 0.01 | 1.177 | 19.25 | 0.05 | 10.9 | 89.1 | 0.0 | -1.39 | 1.75 | 0.69 | 0.78 | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✔ | 6RDV | 4832 | 2023-12-16 | 2019-04-12 | 3.1 | 3.20 | 3.21 | 3.2 | 0.011 | 1.07 | 1.0 | 0.06 | 15.43 | 0.01 | 2.059 | 6.62 | 0.67 | 5.8 | 93.9 | 0.3 | -3.97 | 0.63 | 0.81 | 2.49 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 16.32 | 0.00 | 1.908 | 11.27 | 0.31 | 4.2 | 95.6 | 0.2 | -0.31 | 0.56 | 0.64 | 0.83 | 2.14 | 33891 | 4502 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7EG9 | 31109 | 2023-12-14 | 2021-03-24 | 3.7 | 4.62 | — | 3.7 | 0.008 | 1.15 | 54.0 | 0.08 | 16.44 | 0.01 | 1.514 | 21.01 | 4.37 | 6.7 | 92.6 | 0.7 | -3.68 | 0.58 | 0.30 | 0.60 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.98 | 0.00 | 2.001 | 13.95 | 0.26 | 5.3 | 94.6 | 0.1 | -0.39 | 1.40 | 0.78 | 0.66 | 0.66 | 84318 | 10176 | 49 | 142 | 11 | 0 | 0 | logfile |
✔ | 6XBW | 22121 | 2023-12-09 | 2020-06-07 | 3.37 | 3.48 | — | 3.4 | 0.010 | 1.30 | 80.0 | 0.09 | 15.50 | 0.01 | 1.049 | 8.64 | 0.61 | 3.3 | 96.5 | 0.3 | -5.55 | 0.74 | 0.85 | 2.39 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.026 | 10.13 | 0.32 | 5.1 | 94.9 | 0.1 | -0.59 | 1.10 | 0.75 | 0.88 | 2.07 | 63090 | 8186 | 38 | 0 | 18 | 0 | 0 | logfile |
✔ | 7YAD | 33709 | 2023-12-08 | 2022-06-27 | 2.66 | 2.45 | 2.92 | 2.2 | 0.003 | 0.55 | 0.0 | 0.04 | 12.58 | 0.00 | 2.165 | 5.84 | 0.00 | 4.5 | 95.3 | 0.1 | -1.22 | 0.71 | 0.77 | 3.55 | 2.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.85 | 0.00 | 2.176 | 6.82 | 0.70 | 5.5 | 94.4 | 0.1 | -1.08 | 2.15 | 0.74 | 0.81 | 2.94 | 6728 | 848 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-12-14 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HJQ | 0236 | 2023-12-12 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.006 | 0.94 | 0.0 | 0.06 | 10.41 | 0.01 | 1.406 | 4.81 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 11.57 | 0.00 | 1.980 | 9.92 | 0.00 | 5.0 | 95.0 | 0.0 | -0.61 | 1.66 | 0.83 | 0.88 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-12-16 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✔ | 6S8B | 10117 | 2023-12-09 | 2019-07-09 | 2.41 | 3.08 | 2.65 | 3.0 | 0.006 | 0.79 | 0.0 | 0.05 | 14.94 | 0.00 | 1.698 | 17.72 | 0.19 | 15.0 | 84.6 | 0.4 | -4.57 | 0.72 | 0.78 | 2.94 | 3.0 | 0.004 | 0.77 | 0.0 | 0.05 | 17.23 | 0.00 | 2.069 | 14.37 | 2.57 | 11.6 | 88.3 | 0.1 | -2.52 | 1.35 | 0.67 | 0.84 | 2.38 | 62151 | 7479 | 35 | 93 | 6 | 0 | 0 | logfile |