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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DNY | 27584 | 2023-12-07 | 2022-07-12 | 2.85 | 3.15 | 2.84 | 3.1 | 0.008 | 0.68 | 0.0 | 0.04 | 17.14 | 0.01 | 2.287 | 8.04 | 0.00 | 2.2 | 97.8 | 0.0 | 2.03 | 0.61 | 0.81 | 3.14 | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 15.83 | 0.00 | 2.099 | 23.23 | 0.87 | 2.8 | 97.2 | 0.0 | 2.98 | 1.12 | 0.62 | 0.84 | 2.69 | 4336 | 558 | 4 | 0 | 1 | 0 | 5 | logfile |
✔ | 7RQU | 24636 | 2023-12-16 | 2021-08-08 | 3.05 | 3.32 | — | 3.3 | 0.012 | 1.15 | 0.0 | 0.06 | 22.09 | 0.00 | 2.334 | 3.79 | 0.00 | 3.2 | 96.8 | 0.0 | 1.69 | 0.63 | 0.76 | 2.73 | 3.3 | 0.002 | 0.44 | 0.0 | 0.03 | 15.82 | 0.00 | 2.358 | 3.08 | 0.36 | 3.4 | 96.6 | 0.0 | 2.03 | 0.27 | 0.65 | 0.80 | 2.58 | 35602 | 2416 | 8 | 0 | 38 | 0 | 16568 | logfile |
✔ | 8ADi | 15363 | 2023-12-12 | 2022-07-08 | 3.4 | 3.67 | 3.39 | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.25 | 0.01 | 1.491 | 4.93 | 0.08 | 4.4 | 95.6 | 0.0 | -0.36 | 0.69 | 0.83 | 3.58 | 3.7 | 0.003 | 0.44 | 0.0 | 0.04 | 14.90 | 0.00 | 1.953 | 5.18 | 0.16 | 4.2 | 95.8 | 0.0 | 0.05 | 0.23 | 0.67 | 0.83 | 3.00 | 23141 | 1505 | 6 | 0 | 0 | 0 | 11353 | logfile |
✔ | 8FA2 | 28948 | 2023-12-07 | 2022-11-25 | 2.82 | 2.48 | 3.15 | 2.1 | 0.006 | 0.55 | 0.0 | 0.04 | 13.54 | 0.00 | 2.297 | 6.56 | 0.00 | 1.8 | 98.2 | 0.0 | -0.12 | 0.76 | 0.79 | 0.72 | 2.0 | 0.003 | 0.45 | 0.0 | 0.04 | 14.46 | 0.00 | 2.218 | 8.87 | 0.67 | 0.0 | 100.0 | 0.0 | 5.30 | 0.38 | 0.76 | 0.79 | 0.78 | 2577 | 342 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL3 | 16944 | 2023-12-07 | 2023-03-30 | 3.5 | 3.67 | 1.73 | 4.2 | 0.009 | 0.67 | 0.0 | 0.06 | 9.52 | 0.01 | 2.263 | 7.26 | 0.00 | 0.0 | 100.0 | 0.0 | -0.18 | 0.42 | 0.77 | 3.49 | 4.2 | 0.003 | 0.45 | 0.0 | 0.06 | 16.45 | 0.00 | 2.289 | 13.91 | 0.40 | 8.1 | 91.9 | 0.0 | -0.56 | 0.88 | 0.36 | 0.74 | 4.57 | 4970 | 330 | 10 | 0 | 0 | 0 | 2500 | logfile |
✔ | 7RQZ | 24641 | 2023-12-16 | 2021-08-08 | 3.32 | 3.07 | — | 3.3 | 0.011 | 0.96 | 0.0 | 0.06 | 18.59 | 0.00 | 2.073 | 6.78 | 0.00 | 4.8 | 95.2 | 0.0 | 0.73 | 0.59 | 0.73 | 1.63 | 3.3 | 0.003 | 0.45 | 0.0 | 0.03 | 16.85 | 0.00 | 2.104 | 4.80 | 0.18 | 3.8 | 96.2 | 0.0 | 1.07 | 0.28 | 0.60 | 0.76 | 1.50 | 32740 | 2128 | 8 | 0 | 20 | 0 | 15608 | logfile |
✔ | 7PXE | 13700 | 2023-12-14 | 2021-10-08 | 2.38 | 2.90 | 2.41 | 2.7 | 0.005 | 0.73 | 0.0 | 0.04 | 16.77 | 0.00 | 2.151 | 5.31 | 1.94 | 1.0 | 99.0 | 0.0 | 1.17 | 0.79 | 0.87 | 3.74 | 2.7 | 0.002 | 0.45 | 0.0 | 0.04 | 15.88 | 0.00 | 2.159 | 4.95 | 2.29 | 1.5 | 98.5 | 0.0 | 1.76 | 0.34 | 0.79 | 0.89 | 4.12 | 28928 | 3540 | 12 | 0 | 36 | 136 | 0 | logfile |
✔ | 8EL8 | 28224 | 2023-12-07 | 2022-09-23 | 3.2 | 3.53 | 3.33 | 3.5 | 0.007 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.403 | 2.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.75 | 0.66 | 0.85 | 2.31 | 3.5 | 0.003 | 0.45 | 0.0 | 0.04 | 15.16 | 0.00 | 2.353 | 2.27 | 0.00 | 2.4 | 97.6 | 0.0 | 1.11 | 0.26 | 0.67 | 0.85 | 2.07 | 4467 | 597 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2023-12-07 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.6 | 0.002 | 0.45 | 0.0 | 0.05 | 13.95 | 0.00 | 2.206 | 8.61 | 3.20 | 6.0 | 94.0 | 0.0 | -1.52 | 1.10 | 0.24 | 0.71 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 8SQK | 40708 | 2023-12-13 | 2023-05-04 | 3.01 | 3.26 | 3.06 | 3.3 | 0.008 | 0.61 | 2.0 | 0.04 | 15.69 | 0.00 | 1.601 | 4.33 | 2.05 | 4.1 | 95.9 | 0.0 | -0.91 | 0.68 | 0.82 | 3.98 | 3.3 | 0.002 | 0.45 | 0.0 | 0.04 | 15.58 | 0.00 | 1.866 | 3.86 | 0.00 | 2.9 | 97.1 | 0.0 | 0.18 | 0.34 | 0.69 | 0.83 | 3.52 | 25550 | 1487 | 14 | 68 | 5 | 131 | 12205 | logfile |
✔ | 8QCA | 18326 | 2023-12-11 | 2023-08-25 | 2.84 | 3.04 | 2.86 | 3.1 | 0.003 | 0.46 | 0.0 | 0.04 | 13.76 | 0.00 | 2.179 | 4.24 | 0.00 | 2.5 | 97.5 | 0.0 | 0.77 | 0.63 | 0.77 | 3.04 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 15.75 | 0.00 | 2.085 | 14.81 | 1.88 | 3.3 | 96.7 | 0.0 | 1.03 | 0.30 | 0.70 | 0.84 | 2.50 | 17573 | 2326 | 6 | 4 | 0 | 0 | 117 | logfile |
✔ | 7XNH | 33315 | 2023-12-11 | 2022-04-28 | 3.1 | 2.98 | 2.73 | 2.9 | 0.006 | 1.12 | 0.0 | 0.05 | 13.57 | 0.01 | 2.144 | 6.68 | 0.61 | 0.6 | 99.4 | 0.0 | -0.23 | 0.72 | 0.87 | 4.77 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 13.55 | 0.00 | 2.333 | 4.76 | 0.15 | 0.8 | 99.2 | 0.0 | 2.76 | 0.97 | 0.73 | 0.84 | 3.00 | 19224 | 2172 | 24 | 0 | 132 | 0 | 0 | logfile |
✔ | 7RXH | 24731 | 2023-12-07 | 2021-08-23 | 2.3 | 3.07 | — | 2.8 | 0.009 | 1.40 | 0.0 | 0.05 | 24.73 | 0.00 | 2.211 | 13.92 | 0.56 | 2.7 | 97.1 | 0.2 | -0.87 | 0.63 | 0.78 | 3.25 | 2.8 | 0.002 | 0.45 | 0.0 | 0.04 | 16.78 | 0.00 | 2.011 | 15.63 | 0.56 | 3.4 | 96.6 | 0.0 | 2.24 | 1.67 | 0.59 | 0.90 | 3.78 | 5631 | 626 | 1 | 0 | 18 | 24 | 48 | logfile |
✔ | 8AP9 | 15562 | 2023-12-12 | 2022-08-09 | 3.7 | 3.41 | 3.21 | 3.4 | 0.006 | 0.48 | 0.0 | 0.04 | 9.77 | 0.00 | 2.191 | 2.85 | 0.40 | 1.9 | 98.1 | 0.0 | -0.08 | 0.57 | 0.83 | 3.96 | 3.4 | 0.003 | 0.45 | 0.0 | 0.04 | 13.30 | 0.00 | 2.173 | 3.87 | 0.00 | 3.2 | 96.8 | 0.0 | -1.41 | 1.40 | 0.63 | 0.86 | 3.25 | 19658 | 1285 | 14 | 0 | 1 | 0 | 9972 | logfile |
✔ | 7STM | 25433 | 2023-12-13 | 2021-11-14 | 3.02 | 3.45 | — | 3.3 | 0.008 | 0.93 | 0.0 | 0.05 | 11.88 | 0.00 | 2.229 | 1.33 | 0.31 | 2.4 | 97.6 | 0.0 | 2.06 | 0.68 | 0.82 | 3.32 | 3.2 | 0.003 | 0.45 | 0.0 | 0.04 | 13.38 | 0.00 | 1.942 | 2.46 | 0.00 | 3.5 | 96.3 | 0.3 | 2.19 | 3.61 | 0.66 | 0.85 | 2.89 | 25040 | 1602 | 4 | 0 | 12 | 0 | 12100 | logfile |
✔ | 6MRU | 9213 | 2023-12-08 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.25 | 0.00 | 2.193 | 3.51 | 0.00 | 0.6 | 99.4 | 0.0 | 5.67 | 3.08 | 0.76 | 0.87 | 1.78 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oRK | 13040 | 2023-12-11 | 2021-06-06 | 3.1 | 3.05 | — | 3.1 | 0.007 | 0.79 | 2.0 | 0.05 | 14.51 | 0.00 | 1.996 | 5.31 | 1.04 | 3.2 | 96.8 | 0.0 | 0.32 | 0.83 | 0.89 | 4.27 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 15.33 | 0.00 | 2.016 | 5.90 | 0.00 | 2.9 | 97.1 | 0.0 | 1.04 | 0.31 | 0.84 | 0.91 | 4.02 | 18699 | 2182 | 7 | 36 | 5 | 48 | 0 | logfile |
✔ | 8EL7 | 28223 | 2023-12-07 | 2022-09-23 | 2.8 | 3.11 | 2.95 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 13.13 | 0.00 | 2.295 | 2.43 | 0.00 | 1.7 | 98.3 | 0.0 | 0.97 | 0.57 | 0.80 | 2.31 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 14.99 | 0.00 | 2.314 | 1.88 | 1.74 | 2.2 | 97.8 | 0.0 | 0.68 | 0.27 | 0.58 | 0.81 | 2.13 | 4562 | 604 | 2 | 0 | 0 | 5 | 0 | logfile |
✔ | 8iXL | 35795 | 2023-12-09 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | 3.6 | 0.003 | 0.46 | 0.0 | 0.04 | 15.79 | 0.00 | 2.249 | 5.53 | 0.63 | 0.4 | 99.6 | 0.0 | 5.68 | 1.12 | 0.68 | 0.85 | 1.11 | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EKS | 28212 | 2023-12-12 | 2022-09-21 | 3.1 | 3.47 | 3.18 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.55 | 0.00 | 2.215 | 3.64 | 0.00 | 1.9 | 98.1 | 0.0 | -2.29 | 0.72 | 0.84 | 3.39 | 3.5 | 0.003 | 0.46 | 0.0 | 0.03 | 14.76 | 0.00 | 2.108 | 5.34 | 0.18 | 2.0 | 98.0 | 0.0 | 1.79 | 0.34 | 0.63 | 0.82 | 3.72 | 20484 | 2504 | 8 | 0 | 4 | 0 | 0 | logfile |