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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MVU | 24056 | 2023-12-13 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.1 | 0.002 | 0.58 | 0.0 | 0.03 | 11.83 | 0.00 | 1.906 | 11.38 | 0.07 | 3.1 | 96.9 | 0.0 | 2.72 | 2.06 | 0.88 | 0.82 | 0.43 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 6XLG | 22243 | 2023-12-09 | 2020-06-28 | 2.71 | 2.81 | — | 2.8 | 0.001 | 0.36 | 0.0 | 0.04 | 10.47 | 0.00 | 2.105 | 5.84 | 0.00 | 1.3 | 98.7 | 0.0 | -3.01 | 0.73 | 0.81 | 4.05 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.67 | 0.00 | 1.940 | 10.08 | 2.15 | 2.0 | 98.0 | 0.0 | -0.33 | 3.19 | 0.78 | 0.89 | 4.15 | 12258 | 1504 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2023-12-08 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 9.02 | 0.00 | 2.112 | 9.71 | 0.00 | 5.4 | 94.6 | 0.0 | -0.02 | 2.07 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6X35 | 22018 | 2023-12-08 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 8FEJ | 29029 | 2023-12-09 | 2022-12-06 | 4.64 | 5.33 | 4.68 | 4.6 | 0.001 | 0.37 | 0.0 | 0.04 | 13.97 | 0.00 | 2.253 | 6.27 | 4.30 | 2.9 | 96.9 | 0.2 | 0.48 | 0.88 | 0.69 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.24 | 0.00 | 2.204 | 9.64 | 0.00 | 6.1 | 93.7 | 0.2 | -0.44 | 1.31 | 0.91 | 0.74 | — | 10464 | 1368 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BEJ | 16005 | 2023-12-14 | 2022-10-21 | 3.24 | 3.94 | 3.38 | 3.7 | 0.002 | 0.37 | 0.0 | 0.04 | 6.96 | 0.00 | 2.170 | 2.39 | 0.00 | 2.1 | 97.9 | 0.0 | 1.70 | 0.73 | 0.84 | 4.62 | 3.7 | 0.003 | 0.49 | 0.0 | 0.04 | 11.52 | 0.00 | 1.978 | 4.01 | 0.00 | 2.4 | 97.6 | 0.0 | 1.70 | 0.95 | 0.73 | 0.84 | 3.96 | 27065 | 1680 | 10 | 0 | 5 | 0 | 13415 | logfile |
✔ | 7TJ2 | 25915 | 2023-12-11 | 2022-01-14 | 3.2 | 3.32 | — | 3.4 | 0.002 | 0.37 | 0.0 | 0.04 | 10.71 | 0.00 | 2.196 | 3.77 | 1.64 | 2.4 | 97.6 | 0.0 | 0.18 | 0.69 | 0.76 | 3.52 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 14.62 | 0.00 | 2.208 | 5.62 | 0.11 | 3.0 | 97.0 | 0.0 | 0.06 | 2.83 | 0.71 | 0.82 | 3.15 | 17083 | 2007 | 8 | 62 | 0 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2023-12-07 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 15.51 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 16.45 | 0.00 | 2.155 | 8.05 | 0.00 | 2.4 | 97.6 | 0.0 | 1.06 | 0.53 | 0.89 | 0.85 | 2.05 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 7TCP | 25816 | 2023-12-10 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.003 | 0.50 | 0.0 | 0.04 | 12.75 | 0.00 | 2.113 | 5.39 | 0.60 | 3.3 | 96.7 | 0.0 | 2.51 | 0.36 | 0.71 | 0.83 | 2.44 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-12-10 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 16.68 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.66 | 0.0 | 0.03 | 19.12 | 0.00 | 2.104 | 12.87 | 0.35 | 5.0 | 94.9 | 0.1 | -0.29 | 2.00 | 0.85 | 0.85 | 1.25 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8GKA | 40181 | 2023-12-12 | 2023-03-17 | 2.55 | 2.76 | 2.62 | 2.8 | 0.001 | 0.38 | 0.0 | 0.03 | 13.14 | 0.00 | 2.291 | 7.21 | 0.54 | 3.2 | 96.8 | 0.0 | 0.61 | 0.63 | 0.78 | 3.74 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 17.64 | 0.00 | 2.223 | 9.80 | 1.35 | 4.1 | 95.9 | 0.0 | 0.60 | 1.61 | 0.65 | 0.83 | 3.20 | 21812 | 2500 | 8 | 0 | 34 | 0 | 0 | logfile |
✔ | 7R9M | 24329 | 2023-12-08 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 9.34 | 0.00 | 2.104 | 9.71 | 0.25 | 2.8 | 97.2 | 0.0 | -0.09 | 1.74 | 0.86 | 0.79 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7R9o | 24330 | 2023-12-08 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 11.10 | 0.00 | 1.929 | 10.88 | 0.25 | 3.4 | 96.6 | 0.0 | -0.54 | 3.44 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 8C92 | 16499 | 2023-12-07 | 2023-01-21 | 3.79 | 4.24 | 4.02 | 3.8 | 0.002 | 0.38 | 0.0 | 0.03 | 21.88 | 0.00 | 1.872 | 5.69 | 0.00 | 4.5 | 95.4 | 0.1 | 0.46 | 0.83 | 0.79 | 1.60 | 3.8 | 0.005 | 0.61 | 0.0 | 0.03 | 22.44 | 0.00 | 2.005 | 18.57 | 0.50 | 7.7 | 92.3 | 0.0 | -1.21 | 0.54 | 0.84 | 0.84 | 1.70 | 53489 | 1700 | 17 | 1873 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2023-12-07 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.005 | 0.60 | 0.0 | 0.05 | 19.10 | 0.00 | 2.290 | 4.76 | 3.88 | 7.2 | 92.8 | 0.0 | -1.69 | 2.16 | 0.49 | 0.88 | 6.49 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oNL | 12997 | 2023-12-10 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 13.87 | 0.00 | 2.200 | 9.71 | 0.74 | 1.4 | 98.6 | 0.0 | 2.16 | 0.57 | 0.64 | 0.81 | 1.09 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TQV | 26073 | 2023-12-11 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 10.29 | 0.00 | 2.162 | 5.00 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.19 | 0.00 | 2.216 | 7.44 | 0.22 | 3.6 | 96.4 | 0.0 | -0.46 | 1.52 | 0.73 | 0.77 | 2.11 | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✔ | 8QHP | 18415 | 2023-12-08 | 2023-09-08 | 2.8 | 3.49 | 2.82 | 3.3 | 0.002 | 0.38 | 0.0 | 0.04 | 11.64 | 0.00 | 2.176 | 6.09 | 0.00 | 1.0 | 99.0 | 0.0 | 1.77 | 0.76 | 0.86 | 4.14 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.64 | 0.00 | 2.158 | 6.98 | 0.98 | 1.2 | 98.8 | 0.0 | 2.46 | 0.86 | 0.74 | 0.85 | 3.32 | 6788 | 820 | 4 | 0 | 2 | 0 | 0 | logfile |