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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HD5 | 0201 | 2023-12-09 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-12-07 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 22.03 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.90 | 0.0 | 0.04 | 27.59 | 0.01 | 1.795 | 82.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.58 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7KoD | 22972 | 2023-12-11 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.004 | 0.47 | 0.0 | 0.03 | 13.82 | 0.00 | 1.881 | 2.80 | 0.03 | 0.7 | 99.3 | 0.0 | 5.28 | 0.93 | 0.87 | 0.93 | 8.06 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 8FEL | 29032 | 2023-12-08 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 12.77 | 0.00 | 2.288 | 10.75 | 0.00 | 3.8 | 96.2 | 0.0 | 0.13 | 1.69 | 0.74 | 0.45 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2023-12-07 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.003 | 0.43 | 0.0 | 0.05 | 17.01 | 0.00 | 2.241 | 5.71 | 1.94 | 5.8 | 94.2 | 0.0 | -2.86 | 0.38 | 0.47 | 0.87 | 6.51 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2023-12-07 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.005 | 0.60 | 0.0 | 0.05 | 19.10 | 0.00 | 2.290 | 4.76 | 3.88 | 7.2 | 92.8 | 0.0 | -1.69 | 2.16 | 0.49 | 0.88 | 6.49 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-12-10 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 21.31 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 27.65 | 0.01 | 1.932 | 71.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.94 | 0.89 | 0.79 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-12-13 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-12-09 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-12-08 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZBo | 6746 | 2023-12-15 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.003 | 0.79 | 1.0 | 0.04 | 13.14 | 0.00 | 2.131 | 20.40 | 0.00 | 5.8 | 94.2 | 0.0 | -2.51 | 2.97 | 0.74 | 0.80 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2023-12-09 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 23.47 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.70 | 0.0 | 0.04 | 24.80 | 0.01 | 1.762 | 32.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.16 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 6X35 | 22018 | 2023-12-08 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 7LH3 | 23335 | 2023-12-09 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.71 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 10.77 | 0.00 | 2.289 | 10.84 | 0.00 | 3.5 | 96.5 | 0.0 | 1.90 | 1.12 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-12-09 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 23.45 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.72 | 0.0 | 0.04 | 24.05 | 0.01 | 1.912 | 21.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.77 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 8H8B | 34541 | 2023-12-08 | 2022-10-22 | 3.16 | 3.37 | 3.20 | 3.3 | 0.001 | 0.46 | 0.0 | 0.04 | 13.00 | 0.00 | 2.226 | 6.42 | 0.67 | 6.3 | 93.7 | 0.0 | -2.99 | 0.70 | 0.76 | 2.74 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.26 | 0.00 | 2.256 | 6.60 | 0.34 | 9.5 | 90.5 | 0.0 | -1.76 | 0.61 | 0.74 | 0.85 | 3.67 | 8344 | 1027 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLG | 22243 | 2023-12-09 | 2020-06-28 | 2.71 | 2.81 | — | 2.8 | 0.001 | 0.36 | 0.0 | 0.04 | 10.47 | 0.00 | 2.105 | 5.84 | 0.00 | 1.3 | 98.7 | 0.0 | -3.01 | 0.73 | 0.81 | 4.05 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.67 | 0.00 | 1.940 | 10.08 | 2.15 | 2.0 | 98.0 | 0.0 | -0.33 | 3.19 | 0.78 | 0.89 | 4.15 | 12258 | 1504 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-12-07 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-12-09 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-12-09 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |