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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TKo | 25976 | 2023-12-12 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.00 | 5.80 | 0.00 | 2.139 | 12.52 | 0.00 | 10.1 | 89.6 | 0.2 | -0.46 | 0.84 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2023-12-12 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKQ | 25978 | 2023-12-12 | 2022-01-17 | 4.5 | 7.57 | 4.53 | 4.3 | 0.019 | 2.21 | 0.0 | 0.00 | 6.72 | 0.01 | 2.371 | 0.08 | 0.00 | 4.0 | 94.5 | 1.5 | -0.48 | 0.59 | 0.61 | — | 4.3 | 0.009 | 1.21 | 0.0 | 0.00 | 7.52 | 0.01 | 1.933 | 34.86 | 0.00 | 13.6 | 85.9 | 0.5 | -2.21 | 0.83 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG7 | 22313 | 2023-12-11 | 2020-07-18 | 3.5 | 2.41 | 3.57 | 3.4 | 0.008 | 1.54 | 0.0 | 0.00 | 6.82 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 96.9 | 0.1 | -0.73 | 0.63 | 0.55 | — | 2.3 | 0.006 | 1.16 | 0.0 | 0.00 | 7.34 | 0.01 | 2.119 | 4.50 | 0.00 | 14.7 | 85.1 | 0.1 | -2.00 | 1.65 | 0.74 | 0.72 | — | 19316 | 4818 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-12-10 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 21.31 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.05 | 27.65 | 0.01 | 1.932 | 71.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.94 | 0.89 | 0.79 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2023-12-09 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 20.10 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.007 | 1.00 | 0.0 | 0.05 | 22.86 | 0.01 | 2.032 | 23.12 | 0.76 | 12.5 | 86.2 | 1.3 | -2.59 | 1.90 | 0.23 | 0.64 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-12-10 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.9 | 0.007 | 1.10 | 0.0 | 0.09 | 14.86 | 0.00 | 2.156 | 11.87 | 0.00 | 20.1 | 79.9 | 0.0 | -3.21 | 2.77 | 0.87 | 0.64 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-12-07 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 22.03 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.90 | 0.0 | 0.04 | 27.59 | 0.01 | 1.795 | 82.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.58 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6PC5 | 20296 | 2023-12-12 | 2019-06-16 | 2.7 | 3.05 | — | 2.9 | 0.006 | 0.50 | 1.0 | 0.02 | 22.76 | 0.03 | 1.965 | 2.72 | 1.57 | 6.1 | 93.8 | 0.1 | -3.49 | 0.73 | 0.88 | 5.14 | 2.9 | 0.005 | 0.69 | 1.0 | 0.04 | 22.99 | 0.01 | 1.985 | 7.46 | 3.41 | 6.5 | 93.3 | 0.2 | -1.07 | 1.24 | 0.74 | 0.91 | 4.37 | 72206 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-12-09 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 23.45 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.72 | 0.0 | 0.04 | 24.05 | 0.01 | 1.912 | 21.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.77 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7JSH | 22454 | 2023-12-08 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7XSL | 33426 | 2023-12-09 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 23.54 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.007 | 0.70 | 0.0 | 0.04 | 24.74 | 0.01 | 1.811 | 33.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.00 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7XSK | 33425 | 2023-12-09 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 23.47 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.70 | 0.0 | 0.04 | 24.80 | 0.01 | 1.762 | 32.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.16 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7YCi | 33740 | 2023-12-08 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 23.12 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.03 | 23.51 | 0.00 | 1.865 | 24.04 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.95 | 0.89 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 7YCH | 33739 | 2023-12-08 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 22.85 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 23.21 | 0.00 | 1.809 | 31.82 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.46 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-12-11 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 19.81 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.006 | 0.96 | 0.0 | 0.05 | 24.08 | 0.01 | 1.933 | 41.33 | 1.13 | 22.9 | 75.6 | 1.5 | -5.20 | 2.35 | 0.80 | 0.66 | 0.65 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2023-12-07 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 25.90 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 27.41 | 0.01 | 1.783 | 37.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 8HD6 | 34670 | 2023-12-08 | 2022-11-03 | 3.73 | 4.52 | 3.73 | 3.2 | 0.002 | 0.54 | 0.0 | 0.02 | 22.31 | 0.00 | 1.969 | 2.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.78 | — | 3.3 | 0.006 | 0.74 | 0.0 | 0.04 | 24.31 | 0.01 | 1.777 | 23.66 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.32 | 0.91 | 0.82 | — | 8980 | 0 | 1 | 419 | 25 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2023-12-12 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.40 | 0.0 | 0.02 | 22.71 | 0.03 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.004 | 0.69 | 0.0 | 0.03 | 23.17 | 0.01 | 2.015 | 10.82 | 4.99 | 8.9 | 91.0 | 0.1 | -2.05 | 0.50 | 0.63 | 0.82 | 2.04 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCS | 20306 | 2023-12-12 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 22.72 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.006 | 0.72 | 0.0 | 0.04 | 22.94 | 0.01 | 1.978 | 8.45 | 3.66 | 6.9 | 92.8 | 0.3 | -1.46 | 1.27 | 0.67 | 0.89 | 3.59 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |