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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GYP | 0095 | 2023-12-11 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.86 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.71 | 0.0 | 0.04 | 15.05 | 0.00 | 2.161 | 11.89 | 0.45 | 6.0 | 93.9 | 0.0 | -0.60 | 0.79 | 0.74 | 0.82 | 1.53 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYU | 0097 | 2023-12-11 | 2018-07-02 | 3.0 | 3.35 | — | 3.3 | 0.005 | 0.94 | 0.0 | 0.05 | 10.80 | 0.01 | 1.349 | 6.02 | 0.74 | 6.4 | 93.4 | 0.3 | -4.30 | 0.70 | 0.73 | 3.36 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.36 | 0.00 | 2.139 | 11.13 | 2.06 | 5.9 | 94.1 | 0.0 | 0.03 | 1.71 | 0.79 | 0.84 | 2.51 | 18159 | 2193 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6H25 | 0128 | 2023-12-12 | 2018-07-13 | 3.8 | 3.89 | — | 3.9 | 0.006 | 1.10 | 1.0 | 0.06 | 10.98 | 0.01 | 1.101 | 12.90 | 1.51 | 5.7 | 93.9 | 0.4 | -2.77 | 0.49 | 0.63 | 1.51 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.76 | 0.00 | 2.094 | 9.76 | 0.40 | 4.9 | 95.0 | 0.0 | 0.01 | 1.57 | 0.70 | 0.81 | 1.54 | 22138 | 2971 | 12 | 6 | 0 | 0 | 0 | logfile |
✘ | 6H3i | 0133 | 2023-12-12 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 6H3J | 0134 | 2023-12-12 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 13.50 | 0.00 | 1.906 | 56.16 | 0.18 | 20.0 | 80.0 | 0.0 | -5.13 | 2.68 | 0.77 | 0.86 | 2.87 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6H3L | 0135 | 2023-12-14 | 2018-07-19 | 4.2 | 4.88 | — | 3.9 | 0.015 | 1.70 | 0.0 | 0.08 | 11.55 | 0.01 | 2.124 | 5.25 | 0.06 | 7.7 | 91.4 | 0.9 | -1.43 | 0.92 | 0.69 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 13.27 | 0.01 | 1.903 | 24.70 | 0.00 | 10.0 | 89.8 | 0.2 | -2.48 | 1.35 | 0.91 | 0.77 | — | 29319 | 1881 | 3 | 0 | 0 | 0 | 14388 | logfile |
✔ | 6H3N | 0136 | 2023-12-14 | 2018-07-19 | 3.25 | 3.45 | — | 3.4 | 0.015 | 1.52 | 0.0 | 0.07 | 10.78 | 0.01 | 2.457 | 1.67 | 0.00 | 4.7 | 94.6 | 0.7 | -0.43 | 0.77 | 0.79 | 4.55 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.71 | 0.00 | 2.099 | 5.39 | 0.19 | 4.7 | 95.3 | 0.0 | -0.02 | 1.46 | 0.71 | 0.77 | 4.05 | 29319 | 1881 | 3 | 0 | 0 | 0 | 14388 | logfile |
✔ | 6H5i | 0140 | 2023-12-07 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H61 | 0143 | 2023-12-09 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 13.13 | 0.00 | 2.107 | 14.74 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 14.28 | 0.00 | 2.017 | 24.34 | 0.00 | 7.7 | 92.3 | 0.0 | 0.74 | 1.82 | 0.63 | 0.77 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 6H66 | 0145 | 2023-12-09 | 2018-07-26 | 4.16 | 4.23 | 3.99 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 12.77 | 0.01 | 2.070 | 15.41 | 0.17 | 10.4 | 89.4 | 0.2 | -3.09 | 0.61 | 0.76 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 14.65 | 0.00 | 2.036 | 22.85 | 0.00 | 7.2 | 92.8 | 0.0 | 0.47 | 1.85 | 0.62 | 0.77 | — | 10017 | 667 | 4 | 30 | 1 | 0 | 4120 | logfile |
✔ | 6H67 | 0146 | 2023-12-16 | 2018-07-26 | 3.6 | 3.68 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.06 | 11.05 | 0.01 | 2.050 | 5.44 | 0.05 | 7.5 | 92.5 | 0.0 | -4.14 | 0.68 | 0.72 | 2.07 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 15.79 | 0.00 | 1.954 | 11.90 | 0.35 | 4.7 | 95.3 | 0.0 | -1.38 | 3.27 | 0.69 | 0.74 | 1.38 | 33803 | 4140 | 22 | 43 | 7 | 0 | 0 | logfile |
✘ | 6H68 | 0147 | 2023-12-16 | 2018-07-26 | 4.6 | 4.70 | — | 4.6 | 0.005 | 0.84 | 0.0 | 0.05 | 11.63 | 0.01 | 2.243 | 6.67 | 0.05 | 7.3 | 92.7 | 0.0 | -3.73 | 0.72 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37103 | 4497 | 22 | 67 | 6 | 0 | 0 | logfile |
✔ | 6H6B | 0148 | 2023-12-08 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.2 | 0.004 | 0.88 | 0.0 | 0.18 | 11.61 | 0.00 | 2.134 | 5.82 | 0.75 | 18.8 | 81.2 | 0.0 | -3.89 | 1.83 | 0.40 | 0.77 | 3.57 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6HA1 | 0176 | 2023-12-15 | 2018-08-07 | 3.1 | 3.55 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.07 | 23.52 | 0.01 | 1.892 | 7.10 | 0.90 | 8.8 | 90.7 | 0.6 | -3.85 | 0.78 | 0.79 | 2.71 | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 23.39 | 0.01 | 2.042 | 16.19 | 0.86 | 9.1 | 90.7 | 0.2 | -1.34 | 0.63 | 0.83 | 0.87 | 1.93 | 140824 | 5299 | 52 | 4622 | 1 | 0 | 0 | logfile |
✔ | 6HBU | 0190 | 2023-12-08 | 2018-08-13 | 3.09 | 3.04 | — | 3.1 | 0.009 | 1.18 | 0.0 | 0.06 | 11.56 | 0.01 | 1.965 | 4.88 | 0.00 | 4.9 | 94.6 | 0.5 | -5.40 | 0.75 | 0.86 | 5.08 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.10 | 0.00 | 2.063 | 7.48 | 0.10 | 5.2 | 94.6 | 0.2 | 0.13 | 0.54 | 0.78 | 0.89 | 3.92 | 9146 | 1168 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HCG | 0193 | 2023-12-14 | 2018-08-15 | 4.3 | 3.90 | 4.21 | 3.9 | 0.011 | 1.31 | 0.0 | 0.07 | 10.57 | 0.01 | 1.943 | 35.63 | 0.00 | 9.9 | 90.1 | 0.0 | -4.43 | 0.82 | 0.73 | — | 3.7 | 0.004 | 0.76 | 0.0 | 0.05 | 12.58 | 0.00 | 2.040 | 18.56 | 0.00 | 8.6 | 91.4 | 0.0 | -1.77 | 2.75 | 0.84 | 0.77 | — | 85185 | 11295 | 45 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HCo | 0196 | 2023-12-09 | 2018-08-15 | 3.58 | 4.08 | — | 3.7 | 0.009 | 1.05 | 0.0 | 0.06 | 10.57 | 0.01 | 2.082 | 7.85 | 0.45 | 7.9 | 92.1 | 0.0 | -4.59 | 0.65 | 0.75 | 1.63 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 12.89 | 0.00 | 2.129 | 16.63 | 0.52 | 5.8 | 94.2 | 0.0 | -0.56 | 1.47 | 0.67 | 0.82 | 1.98 | 12338 | 1576 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 6HCY | 0199 | 2023-12-09 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 16.87 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.85 | 0.00 | 2.250 | 7.27 | 0.35 | 4.5 | 95.5 | 0.0 | 0.27 | 1.76 | 0.73 | 0.92 | 3.02 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6HD1 | 0200 | 2023-12-09 | 2018-08-17 | 3.8 | 3.97 | 3.67 | 3.8 | 0.015 | 1.21 | 0.0 | 0.06 | 16.63 | 0.01 | 1.971 | 3.39 | 0.79 | 6.2 | 93.8 | 0.0 | -5.57 | 0.74 | 0.85 | 3.28 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.43 | 0.00 | 2.175 | 9.03 | 0.09 | 4.1 | 95.9 | 0.0 | 0.25 | 0.80 | 0.74 | 0.85 | 2.23 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-12-09 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |