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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Y7W | 33672 | 2023-12-07 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.20 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 7FiL | 31602 | 2023-12-07 | 2021-07-31 | 3.0 | 2.84 | — | 3.6 | 0.008 | 1.05 | 2.0 | 0.06 | 18.46 | 0.01 | 2.213 | 19.35 | 8.76 | 7.7 | 91.1 | 1.2 | -1.82 | 0.71 | 0.75 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3993 | 504 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W7U | 32348 | 2023-12-08 | 2021-12-06 | 3.0 | 2.54 | 2.92 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 12.54 | 0.00 | 1.966 | 7.56 | 0.00 | 2.6 | 97.4 | 0.0 | 0.77 | 0.59 | 0.77 | 1.85 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 16.36 | 0.00 | 2.048 | 8.38 | 2.32 | 3.0 | 97.0 | 0.0 | 0.46 | 1.31 | 0.60 | 0.80 | 1.76 | 7833 | 1015 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8i7N | 35223 | 2023-12-08 | 2023-02-01 | 2.98 | 3.12 | 2.92 | 3.0 | 0.006 | 0.66 | 0.0 | 0.04 | 22.00 | 0.00 | 1.982 | 2.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.82 | 0.83 | — | 3.0 | 0.008 | 0.74 | 0.0 | 0.04 | 21.93 | 0.01 | 1.938 | 5.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.88 | 0.92 | — | 8979 | 0 | 1 | 418 | 29 | 0 | 0 | logfile |
✔ | 6ZPG | 11338 | 2023-12-07 | 2020-07-08 | 4.6 | 4.29 | — | 7.0 | 0.004 | 0.99 | 0.0 | 0.05 | 15.64 | 0.01 | 2.313 | 5.51 | 0.25 | 5.6 | 94.4 | 0.0 | -3.85 | 0.60 | 0.55 | — | 7.0 | 0.003 | 0.83 | 0.0 | 0.04 | 15.58 | 0.00 | 2.236 | 19.15 | 0.00 | 6.1 | 93.9 | 0.0 | 0.38 | 1.97 | 0.65 | 0.63 | — | 3808 | 463 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y6K | 10706 | 2023-12-09 | 2020-02-26 | 3.78 | 3.86 | — | 3.8 | 0.012 | 0.99 | 1.0 | 0.06 | 16.00 | 0.01 | 1.889 | 11.41 | 2.36 | 12.5 | 87.4 | 0.2 | -5.70 | 0.75 | 0.88 | 2.58 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 16.76 | 0.00 | 1.957 | 4.88 | 0.26 | 6.3 | 93.7 | 0.0 | -2.50 | 1.01 | 0.76 | 0.86 | 2.12 | 10351 | 1299 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iWE | 35765 | 2023-12-07 | 2023-03-29 | 3.4 | 3.95 | 3.24 | 3.8 | 0.004 | 0.93 | 1.0 | 0.07 | 16.00 | 0.00 | 2.321 | 10.10 | 2.84 | 5.9 | 94.1 | 0.0 | -0.50 | 0.58 | 0.79 | 2.37 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.63 | 0.00 | 2.185 | 4.36 | 1.42 | 5.5 | 94.5 | 0.0 | 0.49 | 1.00 | 0.60 | 0.84 | 1.73 | 2236 | 296 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7W7T | 32347 | 2023-12-08 | 2021-12-06 | 3.4 | 2.93 | 3.31 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 13.40 | 0.00 | 2.069 | 10.32 | 0.11 | 2.9 | 97.1 | 0.0 | 0.71 | 0.57 | 0.70 | 1.45 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.60 | 0.00 | 2.053 | 9.56 | 0.34 | 3.7 | 96.3 | 0.0 | -0.12 | 1.82 | 0.58 | 0.73 | 1.21 | 7903 | 1021 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TX6 | 26155 | 2023-12-07 | 2022-02-07 | 3.3 | 3.60 | 3.29 | 3.5 | 0.008 | 0.90 | 1.0 | 0.05 | 17.01 | 0.01 | 2.327 | 6.69 | 0.62 | 3.0 | 97.0 | 0.0 | 2.51 | 0.53 | 0.76 | 2.79 | 3.6 | 0.003 | 0.70 | 1.0 | 0.05 | 14.77 | 0.00 | 2.362 | 7.96 | 0.00 | 2.8 | 97.2 | 0.0 | 1.47 | 1.19 | 0.54 | 0.78 | 2.32 | 3169 | 398 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VLR | 32024 | 2023-12-08 | 2021-10-05 | 3.4 | 3.65 | 3.41 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.84 | 0.00 | 2.052 | 4.29 | 0.94 | 1.6 | 98.4 | 0.0 | 1.47 | 0.70 | 0.84 | 1.66 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 15.43 | 0.00 | 2.024 | 7.49 | 0.31 | 1.4 | 98.6 | 0.0 | 3.04 | 1.53 | 0.65 | 0.84 | 1.24 | 9003 | 1145 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 8P52 | 17440 | 2023-12-12 | 2023-05-23 | 3.6 | 3.64 | — | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 13.73 | 0.01 | 2.166 | 3.44 | 0.00 | 5.6 | 94.4 | 0.0 | -2.19 | 0.78 | 0.55 | 1.88 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.35 | 0.00 | 2.128 | 8.70 | 0.25 | 4.5 | 95.5 | 0.0 | 0.12 | 1.54 | 0.85 | 0.74 | 1.49 | 22783 | 2914 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TX7 | 26156 | 2023-12-07 | 2022-02-07 | 3.8 | 4.02 | 3.76 | 3.9 | 0.008 | 0.76 | 0.0 | 0.07 | 21.15 | 0.00 | 2.072 | 6.28 | 0.00 | 1.8 | 98.2 | 0.0 | 3.77 | 0.44 | 0.74 | 1.59 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.45 | 0.00 | 2.244 | 8.70 | 0.33 | 2.0 | 98.0 | 0.0 | 2.10 | 1.33 | 0.47 | 0.75 | 1.83 | 3203 | 397 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8iWM | 35771 | 2023-12-07 | 2023-03-30 | 3.17 | 3.65 | 2.80 | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 14.98 | 0.00 | 2.390 | 9.55 | 5.26 | 3.4 | 96.6 | 0.0 | -2.66 | 0.56 | 0.76 | 2.24 | 3.5 | 0.002 | 0.65 | 0.0 | 0.04 | 15.22 | 0.00 | 2.254 | 8.78 | 1.05 | 2.2 | 97.8 | 0.0 | 0.48 | 0.58 | 0.59 | 0.77 | 2.24 | 1980 | 271 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8C03 | 16354 | 2023-12-07 | 2022-12-15 | 3.89 | 4.09 | 3.71 | 4.1 | 0.007 | 0.86 | 0.0 | 0.04 | 12.87 | 0.00 | 1.232 | 8.74 | 3.06 | 2.8 | 97.2 | 0.0 | 2.75 | 0.56 | 0.76 | 1.69 | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 16.14 | 0.00 | 2.172 | 14.22 | 0.56 | 2.1 | 97.9 | 0.0 | 2.25 | 1.50 | 0.56 | 0.78 | 1.78 | 3330 | 429 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2023-12-07 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 25.64 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.96 | 0.0 | 0.05 | 27.65 | 0.01 | 1.738 | 53.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.75 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 8DEP | 27394 | 2023-12-07 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 19.70 | 0.01 | 2.197 | 5.44 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 13.71 | 0.00 | 2.207 | 9.60 | 0.65 | 2.0 | 98.0 | 0.0 | 2.11 | 0.67 | 0.46 | 0.77 | 1.68 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-12-07 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y7V | 33671 | 2023-12-07 | 2022-06-22 | 2.2 | 2.46 | 2.24 | 2.4 | 0.005 | 0.73 | 0.0 | 0.07 | 16.08 | 0.00 | 2.078 | 5.73 | 1.11 | 3.2 | 96.8 | 0.0 | 0.09 | 0.71 | 0.86 | 4.53 | 2.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.230 | 4.80 | 3.54 | 2.6 | 97.4 | 0.0 | 1.67 | 0.36 | 0.69 | 0.87 | 4.02 | 4341 | 532 | 1 | 0 | 4 | 58 | 0 | logfile |
✔ | 6L42 | 0828 | 2023-12-10 | 2019-10-15 | 3.4 | 3.83 | — | 3.7 | 0.013 | 3.32 | 109.0 | 0.17 | 16.55 | 0.02 | 1.223 | 41.56 | 6.61 | 11.4 | 86.6 | 2.0 | -5.16 | 0.79 | 0.75 | 1.25 | 3.7 | 0.004 | 0.88 | 0.0 | 0.05 | 16.72 | 0.01 | 2.057 | 13.83 | 0.43 | 11.2 | 88.5 | 0.3 | -2.67 | 0.84 | 0.82 | 0.84 | 1.45 | 14827 | 1864 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-12-07 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |