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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7URD | 26709 | 2023-12-07 | 2022-04-21 | 2.92 | 3.41 | 2.97 | 3.3 | 0.017 | 0.95 | 0.0 | 0.83 | 26.25 | 0.00 | 2.177 | 10.24 | 0.00 | 5.0 | 95.0 | 0.0 | -2.44 | 0.59 | 0.86 | 3.86 | 3.3 | 0.003 | 1.10 | 0.0 | 0.12 | 19.93 | 0.00 | 2.243 | 5.94 | 0.69 | 3.8 | 96.2 | 0.0 | 0.63 | 0.95 | 0.55 | 0.85 | 3.42 | 5534 | 678 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 8D3U | 27164 | 2023-12-11 | 2022-06-01 | 3.7 | 3.38 | 3.74 | 3.6 | 0.005 | 1.15 | 1.0 | 0.05 | 17.66 | 0.00 | 1.392 | 12.21 | 0.63 | 5.2 | 94.7 | 0.1 | 0.50 | 0.64 | 0.81 | 1.41 | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 17.53 | 0.00 | 2.162 | 10.92 | 0.09 | 4.8 | 95.2 | 0.1 | 0.44 | 0.46 | 0.64 | 0.82 | 1.36 | 10121 | 1287 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RiN | 4892 | 2023-12-14 | 2019-04-24 | 3.7 | 4.07 | — | 4.0 | 0.009 | 0.99 | 0.0 | 0.06 | 11.63 | 0.01 | 1.995 | 13.94 | 0.07 | 13.6 | 86.3 | 0.0 | -4.38 | 0.83 | 0.84 | 2.21 | 4.0 | 0.003 | 0.69 | 0.0 | 0.05 | 15.36 | 0.00 | 2.051 | 8.76 | 0.21 | 7.2 | 92.8 | 0.0 | -0.59 | 1.33 | 0.83 | 0.85 | 1.93 | 27584 | 3363 | 10 | 59 | 3 | 0 | 0 | logfile |
✔ | 8CTL | 26994 | 2023-12-08 | 2022-05-16 | 3.1 | 3.52 | 3.12 | 3.3 | 0.009 | 1.32 | 4.0 | 0.09 | 27.09 | 0.01 | 2.280 | 32.18 | 7.20 | 12.1 | 87.4 | 0.5 | -5.68 | 0.62 | 0.46 | 0.80 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 24.44 | 0.00 | 1.985 | 12.30 | 0.29 | 3.5 | 96.5 | 0.0 | -0.82 | 2.48 | 0.81 | 0.81 | 2.72 | 8138 | 401 | 4 | 233 | 0 | 0 | 0 | logfile |
✔ | 7PY6 | 13714 | 2023-12-15 | 2021-10-09 | 4.1 | 4.66 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.81 | 0.00 | 2.105 | 10.25 | 0.04 | 4.5 | 95.5 | 0.0 | -1.20 | 0.86 | 0.83 | — | 4.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.006 | 11.98 | 0.00 | 4.2 | 95.8 | 0.0 | -0.55 | 0.41 | 0.86 | 0.83 | — | 29959 | 3832 | 11 | 67 | 3 | 0 | 0 | logfile |
✔ | 7E4H | 30985 | 2023-12-09 | 2021-02-13 | 3.01 | 3.56 | — | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 11.78 | 0.00 | 2.195 | 5.39 | 0.00 | 2.2 | 97.8 | 0.0 | -0.52 | 0.64 | 0.79 | 2.98 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.00 | 0.00 | 2.186 | 5.90 | 0.17 | 2.2 | 97.8 | 0.0 | 0.30 | 1.17 | 0.61 | 0.77 | 2.19 | 10752 | 1354 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DXF | 30907 | 2023-12-12 | 2021-01-18 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22940 | 2740 | 8 | 0 | 40 | 0 | 0 | logfile |
✔ | 8H1T | 34431 | 2023-12-11 | 2022-10-04 | 3.0 | 3.40 | 1.70 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 24.61 | 0.00 | 1.336 | 10.82 | 0.00 | 2.2 | 97.8 | 0.0 | 2.26 | 0.72 | 0.67 | 1.40 | 3.2 | 0.004 | 0.67 | 0.0 | 0.04 | 26.29 | 0.00 | 2.167 | 11.95 | 2.76 | 3.4 | 96.6 | 0.0 | 1.74 | 0.65 | 0.76 | 0.74 | 1.33 | 17365 | 1323 | 14 | 334 | 0 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2023-12-11 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 10.94 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 6VVY | 21407 | 2023-12-15 | 2020-02-18 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30033 | 3516 | 12 | 130 | 4 | 0 | 0 | logfile |
✘ | 6FLQ | 4275 | 2023-12-15 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.20 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2023-12-15 | 2020-02-18 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✔ | 8GZ3 | 34389 | 2023-12-08 | 2022-09-24 | 3.3 | 3.13 | — | 3.1 | 0.012 | 1.45 | 3.0 | 0.10 | 14.07 | 0.01 | 2.142 | 5.81 | 1.74 | 1.8 | 98.2 | 0.0 | -0.20 | 0.63 | 0.77 | 2.77 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.00 | 0.00 | 2.167 | 5.48 | 0.16 | 1.0 | 99.0 | 0.0 | 0.98 | 1.19 | 0.71 | 0.83 | 2.88 | 8542 | 789 | 7 | 0 | 434 | 1 | 0 | logfile |
✘ | 7D4P | 30575 | 2023-12-12 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.90 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7DD6 | 30645 | 2023-12-09 | 2020-10-27 | 3.2 | 3.88 | — | 3.7 | 0.008 | 0.81 | 0.0 | 0.05 | 16.89 | 0.00 | 2.126 | 16.92 | 0.07 | 5.3 | 94.7 | 0.0 | -3.07 | 0.70 | 0.77 | 2.12 | 3.7 | 0.002 | 0.67 | 0.0 | 0.05 | 16.17 | 0.00 | 2.107 | 9.02 | 0.30 | 2.7 | 97.3 | 0.0 | -0.02 | 0.76 | 0.72 | 0.81 | 2.12 | 12678 | 1585 | 8 | 0 | 22 | 0 | 0 | logfile |
✔ | 7L2U | 23141 | 2023-12-11 | 2020-12-17 | 3.47 | 3.55 | 3.46 | 3.6 | 0.004 | 0.72 | 0.0 | 0.27 | 13.42 | 0.00 | 2.155 | 0.83 | 0.15 | 4.7 | 95.2 | 0.1 | 0.75 | 0.62 | 0.80 | 2.34 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.04 | 0.00 | 2.174 | 4.18 | 0.20 | 6.6 | 93.4 | 0.0 | 0.85 | 1.05 | 0.65 | 0.86 | 1.84 | 18817 | 2286 | 16 | 0 | 10 | 10 | 0 | logfile |
✔ | 7E7Q | 31002 | 2023-12-10 | 2021-02-26 | 3.3 | 3.41 | — | 3.4 | 0.011 | 1.08 | 0.0 | 0.06 | 15.08 | 0.01 | 1.683 | 10.13 | 1.16 | 11.2 | 88.4 | 0.5 | -2.87 | 0.71 | 0.85 | 3.04 | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 15.70 | 0.00 | 1.996 | 4.96 | 0.19 | 7.0 | 92.9 | 0.1 | -1.08 | 0.37 | 0.71 | 0.86 | 2.05 | 15279 | 1958 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 7YG4 | 33807 | 2023-12-08 | 2022-07-11 | 3.1 | 3.38 | 3.15 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.98 | 0.00 | 2.147 | 7.09 | 0.00 | 3.3 | 96.7 | 0.0 | 0.41 | 0.75 | 0.81 | 1.84 | 3.3 | 0.002 | 0.57 | 0.0 | 0.03 | 17.05 | 0.00 | 2.235 | 6.89 | 0.00 | 3.3 | 96.7 | 0.0 | 2.29 | 0.36 | 0.75 | 0.81 | 0.84 | 7510 | 953 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RPJ | 24616 | 2023-12-08 | 2021-08-03 | 3.2 | 3.54 | 3.29 | 3.6 | 0.014 | 1.72 | 5.0 | 0.10 | 13.32 | 0.01 | 2.458 | 3.51 | 0.98 | 4.5 | 95.4 | 0.1 | -1.66 | 0.57 | 0.65 | 2.39 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 13.68 | 0.00 | 2.142 | 8.27 | 0.37 | 3.1 | 96.9 | 0.0 | 1.51 | 1.12 | 0.65 | 0.82 | 1.85 | 7926 | 926 | 1 | 0 | 19 | 0 | 0 | logfile |
✔ | 6PUR | 20479 | 2023-12-17 | 2019-07-18 | 4.4 | 5.34 | — | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 15.80 | 0.01 | 2.255 | 9.87 | 1.66 | 7.9 | 91.6 | 0.5 | -3.61 | 0.74 | 0.81 | — | 4.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.33 | 0.00 | 2.161 | 13.48 | 0.00 | 7.9 | 92.1 | 0.1 | 0.14 | 0.56 | 0.74 | 0.84 | — | 37268 | 5224 | 8 | 0 | 8 | 0 | 0 | logfile |