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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B64 | 15862 | 2023-12-12 | 2022-09-26 | 2.589 | 2.35 | 2.34 | 2.5 | 0.020 | 4.46 | 0.0 | 0.04 | 21.09 | 0.00 | 1.980 | 8.44 | 1.19 | 0.8 | 99.2 | 0.0 | 3.50 | 0.67 | 0.88 | 4.98 | 2.5 | 0.005 | 1.15 | 0.0 | 0.04 | 20.12 | 0.00 | 1.954 | 7.35 | 1.46 | 1.1 | 98.9 | 0.0 | 2.85 | 0.89 | 0.68 | 0.89 | 4.82 | 21678 | 2249 | 66 | 0 | 75 | 0 | 0 | logfile |
✔ | 6T2C | 10368 | 2023-12-09 | 2019-10-08 | 3.52 | 3.61 | 3.52 | 3.6 | 0.008 | 0.76 | 0.0 | 0.05 | 15.15 | 0.01 | 2.097 | 4.19 | 6.25 | 5.7 | 94.2 | 0.1 | -3.65 | 0.69 | 0.85 | 2.89 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 16.61 | 0.00 | 1.926 | 7.28 | 0.36 | 4.2 | 95.8 | 0.0 | 0.09 | 0.61 | 0.70 | 0.84 | 2.57 | 10700 | 1255 | 5 | 29 | 1 | 0 | 0 | logfile |
✔ | 7P37 | 13178 | 2023-12-10 | 2021-07-07 | 2.96 | 3.18 | 3.03 | 3.2 | 0.005 | 0.85 | 0.0 | 0.05 | 16.90 | 0.00 | 2.280 | 7.21 | 0.00 | 2.4 | 97.6 | 0.0 | 1.79 | 0.68 | 0.76 | 2.89 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 16.91 | 0.00 | 2.193 | 9.49 | 2.05 | 2.4 | 97.6 | 0.0 | 1.55 | 0.92 | 0.69 | 0.81 | 2.79 | 14496 | 1764 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 6VLR | 21232 | 2023-12-12 | 2020-01-24 | 4.42 | 4.62 | 4.43 | 4.4 | 0.021 | 1.76 | 0.0 | 0.10 | 10.49 | 0.01 | 2.046 | 1.26 | 0.13 | 2.6 | 97.2 | 0.2 | 1.05 | 0.72 | 0.80 | — | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 12.24 | 0.00 | 2.160 | 11.77 | 0.00 | 4.1 | 95.8 | 0.1 | 0.72 | 2.73 | 0.73 | 0.83 | — | 21768 | 2611 | 37 | 0 | 92 | 0 | 0 | logfile |
✔ | 3J80 | 2764 | 2023-12-13 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 25.36 | 0.01 | 1.747 | 9.35 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.005 | 0.83 | 0.0 | 0.04 | 23.93 | 0.01 | 1.743 | 24.24 | 1.17 | 12.1 | 86.4 | 1.4 | -1.98 | 1.63 | 0.78 | 0.82 | 0.73 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 8HDR | 34678 | 2023-12-13 | 2022-11-06 | 3.66 | 3.32 | 3.68 | 3.3 | 0.005 | 0.66 | 0.0 | 0.05 | 13.59 | 0.00 | 2.116 | 12.84 | 8.30 | 9.0 | 91.0 | 0.0 | -2.65 | 0.60 | 0.74 | 1.89 | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 15.73 | 0.00 | 2.145 | 11.21 | 0.50 | 7.1 | 92.9 | 0.0 | -1.92 | 1.33 | 0.63 | 0.78 | 2.00 | 78708 | 10296 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LD5 | 23282 | 2023-12-10 | 2021-01-12 | 3.07 | 3.46 | — | 3.4 | 0.006 | 0.67 | 0.0 | 0.05 | 16.01 | 0.00 | 2.102 | 8.95 | 6.51 | 4.3 | 95.7 | 0.0 | -2.06 | 0.77 | 0.82 | 2.94 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.93 | 0.00 | 2.172 | 7.35 | 0.14 | 2.2 | 97.8 | 0.0 | 1.11 | 0.35 | 0.71 | 0.81 | 2.98 | 13542 | 1761 | 9 | 15 | 6 | 0 | 0 | logfile |
✔ | 8DKX | 27493 | 2023-12-07 | 2022-07-06 | 3.0 | 3.53 | 3.00 | 3.4 | 0.005 | 0.75 | 1.0 | 0.05 | 13.28 | 0.00 | 2.099 | 8.39 | 0.62 | 5.5 | 94.5 | 0.0 | -3.42 | 0.62 | 0.84 | 4.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.64 | 0.00 | 2.169 | 7.12 | 2.28 | 5.1 | 94.9 | 0.0 | -0.23 | 0.91 | 0.56 | 0.84 | 3.75 | 4370 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TPC | 26051 | 2023-12-13 | 2022-01-25 | 3.91 | 4.55 | — | 3.9 | 0.014 | 1.84 | 4.0 | 0.10 | 13.44 | 0.02 | 2.508 | 0.44 | 2.26 | 8.8 | 90.1 | 1.0 | -2.02 | 0.83 | 0.77 | 0.71 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.00 | 2.146 | 12.09 | 0.21 | 7.3 | 92.6 | 0.1 | -0.94 | 0.54 | 0.83 | 0.78 | 0.71 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7XW3 | 33490 | 2023-12-09 | 2022-05-26 | 4.04 | 4.31 | 4.11 | 4.2 | 0.009 | 1.24 | 4.0 | 0.07 | 16.20 | 0.01 | 2.218 | 16.13 | 2.51 | 8.4 | 91.5 | 0.1 | -4.09 | 0.72 | 0.64 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 14.84 | 0.00 | 2.117 | 11.37 | 0.07 | 4.3 | 95.6 | 0.1 | -0.93 | 1.35 | 0.71 | 0.63 | — | 12081 | 1502 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KEB | 22837 | 2023-12-12 | 2020-10-10 | 3.48 | 4.20 | — | 3.8 | 0.014 | 1.81 | 4.0 | 0.10 | 12.74 | 0.02 | 2.421 | 0.94 | 0.13 | 9.1 | 90.3 | 0.6 | -2.03 | 0.76 | 0.68 | 1.35 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 13.40 | 0.00 | 2.112 | 10.41 | 0.18 | 5.3 | 94.7 | 0.0 | -0.36 | 1.63 | 0.83 | 0.76 | 1.59 | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6SGR | 10182 | 2023-12-07 | 2019-08-05 | 3.17 | 3.28 | 3.08 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.56 | 0.00 | 2.201 | 5.15 | 0.00 | 3.2 | 96.8 | 0.0 | -3.06 | 0.69 | 0.83 | 3.52 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.49 | 0.00 | 1.999 | 5.21 | 0.07 | 2.6 | 97.4 | 0.0 | 1.25 | 0.77 | 0.69 | 0.85 | 2.84 | 54142 | 3528 | 8 | 0 | 0 | 0 | 27330 | logfile |
✔ | 7TP2 | 26046 | 2023-12-13 | 2022-01-24 | 3.72 | 4.22 | — | 3.7 | 0.014 | 1.76 | 6.0 | 0.10 | 13.20 | 0.01 | 2.529 | 0.21 | 1.32 | 7.2 | 92.4 | 0.4 | -1.34 | 0.85 | 0.84 | 2.45 | 3.7 | 0.007 | 0.78 | 0.0 | 0.05 | 13.51 | 0.00 | 2.080 | 9.82 | 0.30 | 6.2 | 93.7 | 0.1 | -0.52 | 0.47 | 0.85 | 0.86 | 1.83 | 24663 | 3047 | 20 | 0 | 61 | 0 | 0 | logfile |
✔ | 7TP8 | 26048 | 2023-12-13 | 2022-01-25 | 3.4 | 3.77 | — | 3.4 | 0.013 | 1.76 | 6.0 | 0.10 | 12.52 | 0.01 | 2.519 | 0.07 | 0.98 | 6.3 | 92.8 | 0.9 | -0.98 | 0.84 | 0.85 | 4.23 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 12.80 | 0.00 | 2.223 | 4.05 | 0.04 | 4.8 | 95.1 | 0.1 | 0.24 | 1.60 | 0.85 | 0.87 | 2.89 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7M0J | 23612 | 2023-12-12 | 2021-03-11 | 3.52 | 3.78 | — | 3.7 | 0.013 | 1.87 | 1.0 | 0.10 | 13.97 | 0.01 | 2.528 | 0.15 | 1.68 | 7.4 | 92.2 | 0.5 | -2.03 | 0.77 | 0.78 | 2.38 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 15.10 | 0.00 | 2.116 | 9.45 | 0.23 | 4.3 | 95.7 | 0.0 | -0.15 | 1.32 | 0.78 | 0.80 | 2.25 | 22827 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2023-12-09 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 5.90 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.003 | 0.58 | 0.0 | 0.04 | 12.84 | 0.00 | 1.861 | 17.14 | 0.00 | 6.5 | 93.5 | 0.0 | -0.28 | 1.21 | 0.80 | 0.58 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 6C04 | 7320 | 2023-12-14 | 2017-12-27 | 3.27 | 3.62 | — | 3.6 | 0.011 | 1.13 | 20.0 | 0.07 | 19.08 | 0.01 | 1.850 | 9.34 | 14.33 | 8.0 | 91.6 | 0.5 | -4.23 | 0.80 | 0.86 | 2.08 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 18.23 | 0.01 | 2.046 | 7.42 | 0.25 | 4.9 | 95.0 | 0.1 | -0.24 | 1.26 | 0.81 | 0.88 | 1.70 | 27982 | 3351 | 12 | 97 | 3 | 0 | 0 | logfile |
✔ | 7PHL | 13419 | 2023-12-09 | 2021-08-17 | 3.2 | 3.41 | 3.14 | 3.4 | 0.007 | 0.68 | 0.0 | 0.05 | 14.47 | 0.01 | 2.418 | 6.62 | 0.96 | 3.3 | 96.7 | 0.0 | -1.03 | 0.49 | 0.68 | 3.83 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 15.43 | 0.00 | 2.075 | 6.62 | 0.08 | 2.7 | 97.3 | 0.0 | 1.28 | 0.93 | 0.69 | 0.80 | 3.07 | 12604 | 1564 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7TGE | 25880 | 2023-12-12 | 2022-01-07 | 3.68 | 4.05 | 3.74 | 3.7 | 0.004 | 0.76 | 0.0 | 0.06 | 13.34 | 0.01 | 2.270 | 3.50 | 0.09 | 3.8 | 96.2 | 0.0 | -1.30 | 0.80 | 0.72 | 0.89 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 14.24 | 0.00 | 2.097 | 9.43 | 0.04 | 3.8 | 96.2 | 0.0 | -0.37 | 1.57 | 0.81 | 0.75 | 0.76 | 21461 | 2677 | 15 | 0 | 40 | 0 | 0 | logfile |
✔ | 6NQD | 0485 | 2023-12-12 | 2019-01-21 | 3.9 | 3.97 | — | 3.9 | 0.012 | 1.40 | 0.0 | 0.09 | 14.92 | 0.01 | 2.213 | 14.68 | 8.15 | 10.9 | 88.3 | 0.8 | -3.70 | 0.62 | 0.76 | 2.65 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 15.11 | 0.00 | 2.148 | 17.02 | 0.87 | 8.2 | 91.8 | 0.0 | -1.75 | 1.21 | 0.62 | 0.77 | 1.48 | 20175 | 2403 | 54 | 0 | 141 | 0 | 0 | logfile |