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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XUR | 33477 | 2023-12-08 | 2022-05-19 | 3.49 | 3.71 | 3.49 | 3.6 | 0.005 | 0.72 | 0.0 | 0.04 | 19.36 | 0.00 | 2.207 | 10.26 | 0.00 | 8.8 | 91.2 | 0.0 | -2.26 | 0.77 | 0.78 | 2.19 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 20.23 | 0.00 | 2.147 | 8.92 | 0.28 | 5.7 | 94.3 | 0.0 | -1.25 | 0.38 | 0.77 | 0.78 | 2.04 | 7749 | 814 | 6 | 48 | 2 | 0 | 0 | logfile |
✔ | 7T9B | 25755 | 2023-12-12 | 2021-12-18 | 3.72 | 4.06 | 3.76 | 3.9 | 0.021 | 1.77 | 0.0 | 0.13 | 10.43 | 0.01 | 2.289 | 1.04 | 0.98 | 3.7 | 95.6 | 0.7 | 0.40 | 0.81 | 0.86 | 2.63 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 13.14 | 0.00 | 2.131 | 7.49 | 0.18 | 4.5 | 95.4 | 0.0 | -0.17 | 1.38 | 0.81 | 0.85 | 2.36 | 21592 | 2595 | 42 | 0 | 101 | 0 | 0 | logfile |
✔ | 7K9i | 22749 | 2023-12-07 | 2020-09-29 | 3.3 | 3.72 | 3.48 | 3.6 | 0.005 | 0.72 | 0.0 | 0.05 | 12.86 | 0.00 | 2.118 | 12.07 | 0.00 | 3.6 | 96.4 | 0.0 | -0.86 | 0.55 | 0.82 | 3.38 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 14.70 | 0.00 | 2.184 | 13.31 | 0.28 | 3.6 | 96.4 | 0.0 | -0.60 | 1.62 | 0.53 | 0.82 | 2.59 | 3295 | 423 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LN6 | 23450 | 2023-12-16 | 2021-02-06 | 3.58 | 3.85 | 3.59 | 3.3 | 0.015 | 0.82 | 0.0 | 0.04 | 15.44 | 0.01 | 1.989 | 10.99 | 0.03 | 2.6 | 97.3 | 0.0 | 0.78 | 0.73 | 0.67 | 1.23 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 16.09 | 0.00 | 1.821 | 12.67 | 0.16 | 3.0 | 97.0 | 0.0 | 1.43 | 1.23 | 0.86 | 0.83 | 1.17 | 35072 | 4433 | 13 | 0 | 42 | 0 | 0 | logfile |
✔ | 7TC8 | 25805 | 2023-12-12 | 2021-12-23 | 2.4 | 2.46 | — | 2.5 | 0.008 | 0.68 | 0.0 | 0.05 | 17.52 | 0.00 | 1.659 | 12.50 | 3.31 | 2.3 | 97.7 | 0.0 | 0.38 | 0.74 | 0.86 | 5.19 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 17.55 | 0.00 | 1.880 | 18.35 | 2.86 | 2.0 | 98.0 | 0.0 | 2.02 | 0.28 | 0.74 | 0.86 | 5.07 | 20567 | 2113 | 8 | 0 | 4 | 0 | 3200 | logfile |
✔ | 7KDG | 22821 | 2023-12-13 | 2020-10-08 | 3.01 | 3.39 | — | 3.3 | 0.014 | 1.76 | 3.0 | 0.10 | 12.13 | 0.01 | 2.515 | 0.28 | 0.31 | 6.2 | 93.5 | 0.3 | -0.92 | 0.77 | 0.78 | 3.64 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 13.56 | 0.00 | 2.103 | 5.82 | 0.08 | 3.3 | 96.7 | 0.0 | 0.34 | 1.23 | 0.76 | 0.82 | 2.79 | 23700 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7TL9 | 25984 | 2023-12-13 | 2022-01-18 | 3.5 | 3.83 | 3.52 | 3.5 | 0.004 | 0.74 | 0.0 | 0.06 | 13.84 | 0.01 | 2.260 | 3.60 | 0.00 | 3.9 | 96.1 | 0.0 | -0.78 | 0.85 | 0.83 | 2.56 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 2.151 | 6.77 | 0.11 | 3.4 | 96.6 | 0.0 | 0.32 | 0.31 | 0.85 | 0.84 | 2.35 | 25016 | 3083 | 24 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LYN | 23596 | 2023-12-13 | 2021-03-07 | 3.32 | 3.52 | — | 3.5 | 0.013 | 1.75 | 1.0 | 0.10 | 12.75 | 0.01 | 2.504 | 0.13 | 0.86 | 5.8 | 94.0 | 0.3 | -0.95 | 0.77 | 0.84 | 3.55 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.08 | 0.00 | 2.228 | 5.56 | 0.04 | 3.2 | 96.7 | 0.1 | 0.56 | 0.65 | 0.81 | 0.87 | 2.87 | 23641 | 2985 | 6 | 0 | 38 | 0 | 0 | logfile |
✔ | 8CSA | 26961 | 2023-12-13 | 2022-05-12 | 3.84 | 4.24 | 3.87 | 3.9 | 0.012 | 1.75 | 3.0 | 0.09 | 13.74 | 0.02 | 2.527 | 0.19 | 1.18 | 6.0 | 93.8 | 0.2 | -1.46 | 0.82 | 0.78 | 0.63 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.01 | 0.00 | 2.101 | 12.64 | 0.23 | 4.2 | 95.8 | 0.0 | 0.02 | 1.66 | 0.83 | 0.79 | 0.26 | 23442 | 3003 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E95 | 27956 | 2023-12-13 | 2022-08-26 | 2.9 | 3.13 | 2.99 | 3.2 | 0.003 | 0.59 | 0.0 | 0.05 | 14.07 | 0.00 | 1.796 | 5.87 | 4.39 | 4.7 | 95.0 | 0.3 | -0.81 | 0.69 | 0.78 | 2.48 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 17.40 | 0.00 | 1.971 | 6.40 | 3.57 | 4.5 | 95.3 | 0.2 | -0.16 | 1.24 | 0.66 | 0.80 | 2.13 | 23943 | 2909 | 9 | 68 | 3 | 0 | 0 | logfile |
✔ | 7DD7 | 30647 | 2023-12-09 | 2020-10-27 | 3.2 | 3.84 | — | 3.7 | 0.010 | 0.88 | 0.0 | 0.05 | 15.84 | 0.00 | 1.770 | 39.18 | 0.30 | 8.1 | 91.9 | 0.0 | -3.39 | 0.67 | 0.76 | 1.99 | 3.7 | 0.003 | 0.67 | 0.0 | 0.05 | 16.09 | 0.00 | 2.148 | 10.92 | 0.45 | 3.5 | 96.5 | 0.0 | -0.55 | 2.00 | 0.67 | 0.79 | 1.93 | 12737 | 1585 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 6VFX | 21194 | 2023-12-12 | 2020-01-06 | 2.9 | 3.10 | — | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 10.94 | 0.00 | 2.112 | 2.11 | 0.10 | 3.6 | 96.4 | 0.0 | -1.34 | 0.59 | 0.59 | 2.34 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 17.08 | 0.00 | 1.811 | 9.55 | 1.83 | 3.8 | 96.2 | 0.0 | -0.25 | 1.59 | 0.69 | 0.79 | 2.44 | 73348 | 4682 | 27 | 0 | 18 | 0 | 36896 | logfile |
✔ | 7LYo | 23597 | 2023-12-13 | 2021-03-07 | 3.32 | 3.53 | — | 3.5 | 0.013 | 1.75 | 5.0 | 0.09 | 12.47 | 0.01 | 2.511 | 0.09 | 0.43 | 5.4 | 94.3 | 0.3 | -0.89 | 0.78 | 0.83 | 3.84 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 2.191 | 6.52 | 0.24 | 3.7 | 96.2 | 0.1 | 0.40 | 0.66 | 0.81 | 0.87 | 2.98 | 23649 | 2982 | 6 | 0 | 40 | 0 | 0 | logfile |
✔ | 7LMZ | 23443 | 2023-12-16 | 2021-02-06 | 3.06 | 3.60 | 3.20 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 14.06 | 0.01 | 1.978 | 12.37 | 0.00 | 1.6 | 98.3 | 0.1 | 1.04 | 0.79 | 0.72 | 2.20 | 3.1 | 0.004 | 0.59 | 0.0 | 0.04 | 15.09 | 0.00 | 1.893 | 12.41 | 0.03 | 2.5 | 97.5 | 0.0 | 1.39 | 0.61 | 0.88 | 0.86 | 1.98 | 34994 | 4425 | 13 | 0 | 29 | 0 | 0 | logfile |
✔ | 7LWK | 23548 | 2023-12-13 | 2021-03-01 | 2.92 | 3.11 | — | 3.1 | 0.013 | 1.77 | 3.0 | 0.10 | 12.79 | 0.01 | 2.508 | 0.06 | 0.65 | 4.3 | 95.6 | 0.1 | -0.78 | 0.71 | 0.82 | 3.51 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.98 | 0.00 | 2.120 | 5.71 | 1.45 | 2.8 | 97.2 | 0.0 | 0.74 | 1.24 | 0.73 | 0.84 | 2.60 | 23847 | 3003 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 7LWo | 23552 | 2023-12-13 | 2021-03-01 | 2.85 | 3.02 | — | 3.0 | 0.013 | 1.79 | 6.0 | 0.09 | 12.48 | 0.01 | 2.511 | 0.09 | 0.59 | 4.5 | 95.1 | 0.3 | -0.78 | 0.72 | 0.80 | 3.55 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 14.77 | 0.00 | 2.088 | 4.57 | 1.53 | 2.6 | 97.3 | 0.1 | 0.53 | 0.61 | 0.69 | 0.83 | 3.33 | 23556 | 2980 | 9 | 0 | 36 | 0 | 0 | logfile |
✔ | 7Z3A | 14474 | 2023-12-13 | 2022-03-02 | 3.95 | 4.30 | — | 4.1 | 0.024 | 1.92 | 0.0 | 0.16 | 10.00 | 0.01 | 1.982 | 1.57 | 0.41 | 2.7 | 97.3 | 0.0 | 0.25 | 0.80 | 0.79 | 1.88 | 4.1 | 0.004 | 0.91 | 0.0 | 0.05 | 13.70 | 0.00 | 2.020 | 13.62 | 0.53 | 6.0 | 94.0 | 0.0 | -0.39 | 1.49 | 0.81 | 0.83 | 1.58 | 24000 | 2793 | 69 | 0 | 156 | 0 | 0 | logfile |
✔ | 7LWW | 23559 | 2023-12-13 | 2021-03-01 | 3.0 | 3.20 | — | 3.2 | 0.014 | 1.78 | 5.0 | 0.10 | 12.61 | 0.01 | 2.511 | 0.09 | 0.55 | 5.3 | 94.4 | 0.3 | -0.82 | 0.75 | 0.84 | 3.87 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.56 | 0.00 | 2.190 | 6.17 | 1.89 | 3.3 | 96.7 | 0.0 | 0.46 | 1.24 | 0.79 | 0.86 | 3.11 | 23786 | 2982 | 18 | 0 | 50 | 0 | 0 | logfile |
✔ | 7LYM | 23595 | 2023-12-13 | 2021-03-07 | 3.57 | 3.82 | — | 3.7 | 0.013 | 1.73 | 2.0 | 0.10 | 12.92 | 0.01 | 2.536 | 0.04 | 0.84 | 5.3 | 94.4 | 0.4 | -1.08 | 0.80 | 0.83 | 2.78 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 14.06 | 0.00 | 2.129 | 6.41 | 0.27 | 4.0 | 96.0 | 0.0 | 0.29 | 0.65 | 0.81 | 0.83 | 2.47 | 23916 | 3006 | 6 | 0 | 33 | 0 | 0 | logfile |
✔ | 6X2A | 21999 | 2023-12-12 | 2020-05-20 | 3.3 | 3.94 | 3.39 | 3.8 | 0.012 | 1.76 | 4.0 | 0.09 | 12.51 | 0.01 | 2.552 | 0.14 | 1.64 | 6.3 | 93.3 | 0.4 | -1.32 | 0.81 | 0.82 | 3.41 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 13.29 | 0.00 | 2.235 | 6.26 | 0.13 | 3.7 | 96.3 | 0.0 | 0.33 | 2.19 | 0.80 | 0.81 | 2.87 | 21562 | 2875 | 3 | 0 | 0 | 0 | 0 | logfile |