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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6V8P | 21108 | 2023-12-10 | 2019-12-11 | 4.1 | 4.54 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.81 | 11.30 | 0.00 | 2.210 | 3.96 | 0.29 | 6.7 | 93.2 | 0.0 | -2.58 | 0.82 | 0.79 | — | 4.2 | 0.009 | 1.50 | 0.0 | 0.26 | 11.97 | 0.01 | 2.061 | 12.84 | 0.00 | 10.4 | 89.6 | 0.0 | -0.79 | 1.64 | 0.85 | 0.84 | — | 14548 | 2117 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6DMo | 7964 | 2023-12-08 | 2018-06-05 | 4.1 | 4.16 | — | 4.1 | 0.008 | 1.27 | 0.0 | 0.06 | 13.72 | 0.01 | 1.764 | 8.90 | 2.78 | 11.1 | 88.6 | 0.3 | -4.11 | 0.55 | 0.64 | — | 4.1 | 0.003 | 0.87 | 0.0 | 0.05 | 13.46 | 0.00 | 2.164 | 15.20 | 0.00 | 10.2 | 89.8 | 0.0 | -0.51 | 2.18 | 0.58 | 0.72 | — | 7853 | 982 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 6UGE | 20762 | 2023-12-10 | 2019-09-26 | 3.6 | 4.02 | — | 3.9 | 0.008 | 1.07 | 0.0 | 0.05 | 14.61 | 0.01 | 2.060 | 3.35 | 0.23 | 6.4 | 93.6 | 0.1 | -4.80 | 0.71 | 0.69 | 1.89 | 3.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.08 | 0.00 | 1.885 | 6.22 | 0.23 | 4.7 | 95.3 | 0.0 | -0.87 | 0.46 | 0.78 | 0.83 | 1.46 | 13876 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✔ | 8iW7 | 35763 | 2023-12-08 | 2023-03-29 | 2.97 | 3.20 | 2.95 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 15.12 | 0.00 | 2.214 | 9.35 | 1.85 | 3.8 | 96.2 | 0.0 | -1.84 | 0.67 | 0.78 | 2.02 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.58 | 0.00 | 2.193 | 7.73 | 3.71 | 3.5 | 96.5 | 0.0 | -0.74 | 0.39 | 0.67 | 0.77 | 1.87 | 8305 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-12-07 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8B1R | 15803 | 2023-12-12 | 2022-09-12 | 3.2 | 3.47 | 3.13 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 9.18 | 0.00 | 2.210 | 7.58 | 0.34 | 0.7 | 99.3 | 0.0 | 0.06 | 0.84 | 0.87 | 2.66 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 13.23 | 0.00 | 2.221 | 5.19 | 0.17 | 1.6 | 98.4 | 0.0 | 2.27 | 0.64 | 0.86 | 0.90 | 2.75 | 21953 | 2746 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VQW | 21359 | 2023-12-12 | 2020-02-06 | 3.42 | 4.18 | — | 4.0 | 0.010 | 0.94 | 0.0 | 0.06 | 16.25 | 0.01 | 2.245 | 7.87 | 0.57 | 13.1 | 86.9 | 0.0 | -5.04 | 0.78 | 0.79 | 1.92 | 4.0 | 0.006 | 0.72 | 0.0 | 0.04 | 16.91 | 0.00 | 2.099 | 16.17 | 0.57 | 12.3 | 87.7 | 0.0 | -2.46 | 0.47 | 0.78 | 0.79 | 1.41 | 20479 | 2648 | 11 | 40 | 0 | 0 | 0 | logfile |
✔ | 6oF2 | 20040 | 2023-12-09 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.67 | 0.01 | 2.062 | 8.80 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.003 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 1.963 | 10.30 | 2.54 | 8.0 | 92.0 | 0.0 | 0.29 | 1.61 | 0.79 | 0.83 | 1.86 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7BZW | 30261 | 2023-12-09 | 2020-04-28 | 4.6 | 7.66 | 4.73 | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 15.82 | 0.01 | 2.176 | 28.88 | 0.00 | 19.4 | 80.6 | 0.0 | -5.59 | 0.85 | 0.67 | — | 6.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.68 | 0.01 | 1.922 | 20.13 | 0.00 | 19.3 | 80.7 | 0.0 | -2.79 | 1.80 | 0.93 | 0.86 | — | 9756 | 1212 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VN7 | 21249 | 2023-12-08 | 2020-01-29 | 3.2 | 3.53 | — | 3.7 | 0.004 | 0.90 | 0.0 | 0.07 | 8.80 | 0.01 | 2.254 | 4.22 | 0.00 | 2.8 | 97.2 | 0.0 | -2.38 | 0.66 | 0.78 | 2.53 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 13.32 | 0.00 | 2.181 | 6.82 | 0.11 | 1.8 | 98.2 | 0.0 | 1.56 | 0.72 | 0.62 | 0.77 | 1.71 | 8620 | 1052 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6T2V | 10370 | 2023-12-13 | 2019-10-09 | 3.8 | 4.58 | — | 3.8 | 0.002 | 0.45 | 0.0 | 0.03 | 13.09 | 0.01 | 2.213 | 4.84 | 3.02 | 2.0 | 98.0 | 0.0 | -3.62 | 0.88 | 0.73 | 0.79 | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 15.71 | 0.00 | 2.070 | 17.69 | 0.25 | 4.8 | 95.2 | 0.0 | 0.36 | 2.38 | 0.90 | 0.80 | 0.54 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 6ZoX | 11329 | 2023-12-13 | 2020-07-08 | 3.0 | 3.30 | — | 3.1 | 0.011 | 1.61 | 18.0 | 0.09 | 12.34 | 0.01 | 2.015 | 4.01 | 0.90 | 3.6 | 96.2 | 0.2 | 0.27 | 0.81 | 0.81 | 3.15 | 3.1 | 0.003 | 0.63 | 0.0 | 0.05 | 13.96 | 0.00 | 2.092 | 8.67 | 2.37 | 3.2 | 96.8 | 0.0 | 0.24 | 0.54 | 0.79 | 0.82 | 2.27 | 24696 | 3051 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2023-12-11 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 10.50 | 0.01 | 2.273 | 3.08 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 13.53 | 0.00 | 2.272 | 7.35 | 0.23 | 2.6 | 97.4 | 0.0 | 2.23 | 0.50 | 0.64 | 0.83 | 2.24 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 7oHB | 12899 | 2023-12-10 | 2021-05-10 | 3.4 | 3.61 | — | 3.4 | 0.005 | 0.86 | 0.0 | 0.05 | 28.69 | 0.01 | 2.254 | 4.48 | 0.89 | 2.6 | 97.4 | 0.0 | -2.05 | 0.89 | 0.86 | 3.09 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 27.51 | 0.00 | 2.192 | 11.30 | 0.25 | 2.4 | 97.6 | 0.0 | 1.68 | 1.19 | 0.90 | 0.88 | 2.69 | 13424 | 943 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7TS0 | 26104 | 2023-12-08 | 2022-01-31 | 2.8 | 3.02 | — | 3.1 | 0.004 | 0.79 | 0.0 | 0.05 | 8.38 | 0.01 | 2.273 | 3.92 | 0.10 | 1.5 | 98.5 | 0.0 | -1.24 | 0.66 | 0.80 | 2.15 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 15.45 | 0.00 | 2.073 | 6.94 | 2.05 | 2.2 | 97.8 | 0.0 | 1.52 | 1.63 | 0.62 | 0.84 | 2.85 | 9383 | 1186 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ANZ | 11835 | 2023-12-11 | 2020-10-13 | 3.6 | 2.50 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.05 | 15.89 | 0.00 | 2.277 | 4.54 | 0.31 | 6.5 | 93.4 | 0.2 | -5.88 | 0.77 | 0.74 | 1.50 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 17.57 | 0.00 | 2.104 | 10.67 | 0.52 | 6.5 | 93.5 | 0.0 | -0.61 | 0.66 | 0.78 | 0.76 | 1.10 | 16751 | 2041 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UAE | 26422 | 2023-12-07 | 2022-03-12 | 2.6 | 2.71 | 2.62 | 2.3 | 0.012 | 1.76 | 2.0 | 0.10 | 12.18 | 0.02 | 2.282 | 0.11 | 0.00 | 3.9 | 96.1 | 0.0 | -0.18 | 0.66 | 0.87 | 6.01 | 2.3 | 0.003 | 0.71 | 0.0 | 0.04 | 14.97 | 0.00 | 2.191 | 8.11 | 1.47 | 5.4 | 94.6 | 0.0 | 0.05 | 1.66 | 0.68 | 0.89 | 4.31 | 4513 | 535 | 7 | 0 | 18 | 0 | 0 | logfile |
✔ | 7XN3 | 33309 | 2023-12-10 | 2022-04-27 | 2.9 | 3.05 | 2.92 | 3.0 | 0.006 | 0.62 | 0.0 | 0.05 | 13.52 | 0.00 | 2.174 | 6.06 | 2.37 | 7.9 | 92.1 | 0.0 | -0.76 | 0.72 | 0.84 | 3.66 | 3.0 | 0.003 | 0.58 | 0.0 | 0.05 | 14.71 | 0.00 | 2.205 | 5.95 | 0.72 | 6.6 | 93.4 | 0.0 | 0.25 | 0.37 | 0.74 | 0.87 | 3.52 | 14016 | 1830 | 18 | 0 | 12 | 54 | 0 | logfile |
✔ | 6T2U | 10369 | 2023-12-13 | 2019-10-09 | 3.6 | 4.08 | — | 3.6 | 0.002 | 0.48 | 1.0 | 0.04 | 13.11 | 0.01 | 2.211 | 4.80 | 2.98 | 2.0 | 98.0 | 0.0 | -3.59 | 0.85 | 0.71 | 0.66 | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 15.82 | 0.00 | 2.130 | 14.66 | 0.21 | 5.0 | 95.0 | 0.0 | 0.16 | 3.52 | 0.87 | 0.78 | 0.64 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-12-09 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.57 | 0.0 | 0.03 | 16.19 | 0.00 | 2.253 | 11.37 | 0.00 | 1.7 | 98.3 | 0.0 | 4.14 | 1.16 | 0.69 | 0.71 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |