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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8H13 | 34423 | 2023-12-12 | 2022-09-30 | 4.05 | 4.03 | 4.00 | 4.0 | 0.004 | 0.86 | 0.0 | 0.05 | 14.19 | 0.01 | 2.254 | 3.85 | 0.83 | 5.0 | 95.0 | 0.0 | -1.27 | 0.76 | 0.79 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.04 | 13.75 | 0.00 | 2.181 | 7.56 | 0.00 | 4.2 | 95.8 | 0.0 | -0.18 | 0.45 | 0.76 | 0.78 | — | 22113 | 2793 | 6 | 0 | 21 | 0 | 0 | logfile |
✔ | 6RR7 | 4986 | 2023-12-16 | 2019-05-17 | 3.01 | 3.03 | — | 3.0 | 0.010 | 0.85 | 0.0 | 0.05 | 15.58 | 0.01 | 1.252 | 3.20 | 0.00 | 5.1 | 94.9 | 0.0 | -3.62 | 0.77 | 0.81 | 3.57 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 16.78 | 0.00 | 2.013 | 4.91 | 0.00 | 4.1 | 95.9 | 0.0 | -0.56 | 3.50 | 0.77 | 0.83 | 3.10 | 36290 | 2197 | 6 | 30 | 1 | 0 | 18001 | logfile |
✔ | 7TKQ | 25978 | 2023-12-12 | 2022-01-17 | 4.5 | 7.57 | 4.53 | 4.3 | 0.019 | 2.21 | 0.0 | 0.00 | 6.72 | 0.01 | 2.371 | 0.08 | 0.00 | 4.0 | 94.5 | 1.5 | -0.48 | 0.59 | 0.61 | — | 4.3 | 0.009 | 1.21 | 0.0 | 0.00 | 7.52 | 0.01 | 1.933 | 34.86 | 0.00 | 13.6 | 85.9 | 0.5 | -2.21 | 0.83 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAi | 22771 | 2023-12-09 | 2020-10-01 | 3.2 | 3.86 | 3.25 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 12.28 | 0.00 | 2.229 | 4.23 | 0.00 | 3.6 | 96.4 | 0.0 | -1.28 | 0.67 | 0.85 | 2.59 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 14.07 | 0.00 | 2.200 | 5.30 | 0.00 | 2.9 | 97.1 | 0.0 | 2.17 | 0.39 | 0.67 | 0.88 | 1.60 | 10718 | 1343 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 6GTE | 0063 | 2023-12-09 | 2018-06-18 | 4.07 | 3.99 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.06 | 16.98 | 0.01 | 2.232 | 8.08 | 0.75 | 15.6 | 84.3 | 0.1 | -5.76 | 0.73 | 0.71 | — | 3.9 | 0.004 | 0.71 | 0.0 | 0.05 | 17.36 | 0.00 | 2.084 | 18.12 | 0.00 | 11.9 | 88.1 | 0.0 | -3.13 | 0.82 | 0.73 | 0.70 | — | 10872 | 1274 | 4 | 67 | 0 | 0 | 0 | logfile |
✔ | 7STM | 25433 | 2023-12-13 | 2021-11-14 | 3.02 | 3.45 | — | 3.3 | 0.008 | 0.93 | 0.0 | 0.05 | 11.88 | 0.00 | 2.229 | 1.33 | 0.31 | 2.4 | 97.6 | 0.0 | 2.06 | 0.68 | 0.82 | 3.32 | 3.2 | 0.003 | 0.45 | 0.0 | 0.04 | 13.38 | 0.00 | 1.942 | 2.46 | 0.00 | 3.5 | 96.3 | 0.3 | 2.19 | 3.61 | 0.66 | 0.85 | 2.89 | 25040 | 1602 | 4 | 0 | 12 | 0 | 12100 | logfile |
✔ | 7LAS | 23250 | 2023-12-11 | 2021-01-06 | 4.4 | 4.09 | — | 4.1 | 0.009 | 1.37 | 0.0 | 0.06 | 19.05 | 0.01 | 1.386 | 5.56 | 7.55 | 1.5 | 98.5 | 0.0 | -2.56 | 0.60 | 0.75 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 16.11 | 0.00 | 1.298 | 11.83 | 0.00 | 6.1 | 93.9 | 0.0 | -1.38 | 1.74 | 0.62 | 0.77 | — | 18011 | 1098 | 12 | 24 | 8 | 0 | 8624 | logfile |
✔ | 7TKP | 25977 | 2023-12-12 | 2022-01-17 | 4.6 | 7.57 | 4.97 | 4.4 | 0.019 | 2.20 | 0.0 | 0.00 | 6.68 | 0.01 | 2.352 | 0.12 | 0.00 | 4.2 | 94.5 | 1.3 | -0.50 | 0.60 | 0.63 | — | 4.4 | 0.004 | 0.83 | 0.0 | 0.00 | 5.67 | 0.00 | 2.069 | 13.64 | 0.00 | 9.3 | 90.5 | 0.2 | -0.09 | 0.76 | 0.78 | 0.81 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKi | 14043 | 2023-12-08 | 2021-12-17 | 3.13 | 3.29 | 3.04 | 3.2 | 0.011 | 1.99 | 3.0 | 0.10 | 9.18 | 0.01 | 2.508 | 0.00 | 0.00 | 10.1 | 89.9 | 0.0 | -1.50 | 0.41 | 0.79 | 6.28 | 3.3 | 0.003 | 0.60 | 0.0 | 0.05 | 12.04 | 0.00 | 2.098 | 5.09 | 0.00 | 4.7 | 95.3 | 0.0 | -1.88 | 0.76 | 0.39 | 0.80 | 5.64 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7ZPA | 14852 | 2023-12-08 | 2022-04-27 | 3.9 | 4.14 | 3.88 | 4.0 | 0.006 | 0.70 | 0.0 | 0.04 | 19.49 | 0.01 | 2.214 | 9.92 | 0.00 | 6.4 | 93.6 | 0.0 | -0.40 | 0.76 | 0.75 | 1.14 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 20.87 | 0.00 | 2.105 | 10.27 | 0.00 | 5.5 | 94.5 | 0.0 | -0.46 | 0.47 | 0.75 | 0.75 | 0.91 | 9121 | 874 | 4 | 95 | 0 | 0 | 0 | logfile |
✔ | 7TKo | 25976 | 2023-12-12 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.00 | 5.80 | 0.00 | 2.139 | 12.52 | 0.00 | 10.1 | 89.6 | 0.2 | -0.46 | 0.84 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ENJ | 31211 | 2023-12-08 | 2021-04-17 | 4.4 | 4.62 | — | 4.0 | 0.011 | 1.18 | 16.0 | 0.07 | 15.29 | 0.01 | 2.211 | 7.81 | 1.23 | 5.7 | 93.7 | 0.6 | -2.67 | 0.75 | 0.49 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.04 | 14.06 | 0.00 | 2.061 | 16.81 | 0.00 | 5.9 | 94.0 | 0.2 | 0.98 | 0.78 | 0.81 | 0.65 | — | 57971 | 7340 | 27 | 0 | 21 | 0 | 0 | logfile |
✔ | 7R7T | 24304 | 2023-12-16 | 2021-06-25 | 4.5 | 4.85 | — | 4.6 | 0.004 | 1.02 | 0.0 | 0.06 | 15.88 | 0.01 | 2.286 | 6.32 | 0.00 | 7.8 | 92.2 | 0.0 | -3.13 | 0.81 | 0.73 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.05 | 15.14 | 0.01 | 2.088 | 24.50 | 0.00 | 9.3 | 90.7 | 0.0 | -1.85 | 0.94 | 0.83 | 0.76 | — | 35351 | 4470 | 13 | 0 | 12 | 0 | 0 | logfile |
✔ | 5V4S | 8633 | 2023-12-09 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 9.90 | 0.00 | 2.233 | 11.27 | 0.00 | 2.1 | 97.9 | 0.0 | 2.80 | 0.88 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BY0 | 30239 | 2023-12-09 | 2020-04-21 | 4.5 | 5.50 | — | 4.5 | 0.008 | 0.97 | 0.0 | 0.05 | 31.23 | 0.01 | 1.950 | 11.25 | 0.15 | 3.1 | 96.9 | 0.0 | -3.59 | 0.92 | 0.87 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.04 | 30.65 | 0.01 | 2.087 | 22.54 | 0.00 | 5.4 | 94.6 | 0.0 | -0.20 | 1.30 | 0.92 | 0.86 | — | 12693 | 868 | 12 | 286 | 0 | 0 | 0 | logfile |
✔ | 6XMU | 22264 | 2023-12-08 | 2020-06-30 | 3.3 | 3.92 | 3.36 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 11.80 | 0.00 | 1.956 | 6.47 | 0.00 | 4.3 | 95.7 | 0.0 | -2.43 | 0.72 | 0.83 | 2.22 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 13.63 | 0.00 | 1.933 | 6.11 | 0.00 | 3.8 | 96.2 | 0.0 | -0.13 | 0.40 | 0.73 | 0.86 | 1.72 | 8411 | 1090 | 3 | 0 | 22 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2023-12-12 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F56 | 31459 | 2023-12-14 | 2021-06-21 | 4.1 | 4.62 | — | 3.9 | 0.009 | 1.12 | 3.0 | 0.10 | 14.33 | 0.01 | 1.831 | 27.58 | 0.50 | 10.6 | 89.4 | 0.0 | -2.66 | 0.78 | 0.78 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.096 | 15.91 | 0.00 | 6.5 | 93.5 | 0.0 | -0.49 | 0.63 | 0.79 | 0.83 | — | 27834 | 3468 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 8G8G | 29850 | 2023-12-10 | 2023-02-17 | 3.2 | 4.22 | 3.27 | 3.4 | 0.005 | 0.59 | 0.0 | 0.03 | 27.41 | 0.00 | 1.622 | 6.71 | 0.64 | 1.8 | 98.2 | 0.0 | -0.50 | 0.70 | 0.50 | 0.77 | 3.0 | 0.004 | 0.66 | 0.0 | 0.03 | 28.54 | 0.00 | 2.164 | 11.73 | 0.00 | 3.0 | 97.0 | 0.0 | 1.71 | 1.60 | 0.91 | 0.87 | 1.67 | 14558 | 931 | 11 | 348 | 0 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-12-08 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |