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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6K7K | 9937 | 2023-12-09 | 2019-06-07 | 3.04 | 3.15 | 2.84 | 3.1 | 0.011 | 1.45 | 0.0 | 0.07 | 15.18 | 0.01 | 2.000 | 5.46 | 0.35 | 7.1 | 92.9 | 0.0 | -3.51 | 0.63 | 0.85 | 3.58 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 16.16 | 0.00 | 1.869 | 9.03 | 0.61 | 5.7 | 94.3 | 0.0 | -0.14 | 0.98 | 0.69 | 0.88 | 2.96 | 10586 | 1309 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 7JL1 | 22369 | 2023-12-09 | 2020-07-29 | 3.9 | 3.61 | — | 3.7 | 0.011 | 1.38 | 0.0 | 0.05 | 16.79 | 0.00 | 1.727 | 7.15 | 0.14 | 4.5 | 95.5 | 0.0 | 0.42 | 0.57 | 0.77 | 1.98 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 18.66 | 0.00 | 1.812 | 6.94 | 0.43 | 2.5 | 97.5 | 0.0 | 0.74 | 1.55 | 0.59 | 0.79 | 1.71 | 7132 | 827 | 5 | 28 | 4 | 0 | 0 | logfile |
✔ | 7BNN | 12230 | 2023-12-13 | 2021-01-22 | 3.5 | 3.77 | 3.58 | 3.6 | 0.004 | 0.60 | 0.0 | 0.05 | 14.42 | 0.00 | 2.129 | 7.79 | 0.00 | 6.9 | 93.1 | 0.0 | -2.44 | 0.84 | 0.85 | 2.33 | 3.6 | 0.006 | 0.67 | 0.0 | 0.05 | 14.75 | 0.00 | 2.123 | 9.03 | 0.36 | 9.0 | 91.0 | 0.0 | -1.98 | 0.36 | 0.85 | 0.86 | 2.16 | 25775 | 3207 | 14 | 0 | 50 | 0 | 0 | logfile |
✔ | 7X92 | 33064 | 2023-12-08 | 2022-03-15 | 4.1 | 5.14 | 4.05 | 4.5 | 0.005 | 0.74 | 1.0 | 0.06 | 17.17 | 0.01 | 2.106 | 12.50 | 0.27 | 14.5 | 85.5 | 0.0 | -2.53 | 0.77 | 0.69 | — | 4.5 | 0.004 | 0.69 | 0.0 | 0.05 | 13.12 | 0.00 | 1.970 | 22.11 | 0.00 | 14.8 | 84.5 | 0.7 | -2.73 | 1.24 | 0.78 | 0.76 | — | 6529 | 426 | 4 | 0 | 2 | 0 | 3171 | logfile |
✔ | 7YiM | 33861 | 2023-12-07 | 2022-07-17 | 2.6 | 2.93 | 2.77 | 2.9 | 0.013 | 1.14 | 0.0 | 0.07 | 15.89 | 0.01 | 2.272 | 6.72 | 0.78 | 4.9 | 95.1 | 0.0 | -4.17 | 0.67 | 0.68 | 1.25 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.74 | 0.00 | 2.221 | 10.52 | 2.52 | 3.4 | 96.6 | 0.0 | 0.68 | 1.25 | 0.64 | 0.66 | 1.25 | 4657 | 592 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PiM | 13442 | 2023-12-09 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 6.0 | 0.002 | 0.46 | 0.0 | 0.03 | 12.16 | 0.00 | 1.951 | 68.77 | 0.00 | 4.3 | 95.7 | 0.0 | 0.20 | 1.10 | 0.83 | 0.77 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 6FQ5 | 4297 | 2023-12-09 | 2018-02-13 | 3.8 | 4.09 | — | 3.9 | 0.008 | 1.09 | 0.0 | 0.06 | 28.68 | 0.01 | 2.253 | 3.54 | 0.31 | 2.4 | 97.6 | 0.0 | -1.55 | 0.82 | 0.74 | 0.85 | 3.9 | 0.005 | 0.75 | 0.0 | 0.04 | 28.60 | 0.00 | 2.033 | 20.80 | 1.08 | 3.3 | 96.7 | 0.0 | 0.77 | 2.20 | 0.85 | 0.80 | 0.85 | 12193 | 774 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 7X8Y | 33060 | 2023-12-08 | 2022-03-15 | 4.1 | 5.59 | 4.09 | 4.4 | 0.003 | 0.53 | 0.0 | 0.04 | 14.08 | 0.00 | 1.988 | 7.11 | 0.00 | 9.0 | 91.0 | 0.0 | -3.09 | 0.77 | 0.65 | — | 4.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.48 | 0.00 | 1.962 | 12.00 | 0.00 | 12.0 | 88.0 | 0.0 | -2.29 | 0.98 | 0.80 | 0.75 | — | 6731 | 440 | 4 | 0 | 1 | 0 | 3296 | logfile |
✔ | 7X96 | 33068 | 2023-12-08 | 2022-03-15 | 3.4 | 4.29 | 3.35 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.82 | 0.00 | 2.101 | 5.71 | 0.00 | 8.8 | 91.2 | 0.0 | -1.35 | 0.74 | 0.82 | 3.22 | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 14.71 | 0.00 | 2.080 | 8.72 | 0.55 | 9.3 | 90.7 | 0.0 | -0.85 | 4.17 | 0.73 | 0.81 | 3.57 | 6586 | 427 | 4 | 0 | 6 | 0 | 3184 | logfile |
✘ | 6o72 | 0638 | 2023-12-14 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 16.34 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7QiC | 13987 | 2023-12-07 | 2021-12-14 | 4.1 | 4.27 | 4.00 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.83 | 0.00 | 2.221 | 13.06 | 0.20 | 7.7 | 92.3 | 0.0 | -0.78 | 0.64 | 0.79 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.66 | 0.00 | 2.178 | 12.24 | 0.20 | 8.2 | 91.8 | 0.0 | -0.05 | 1.36 | 0.64 | 0.79 | — | 4841 | 639 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KLW | 0720 | 2023-12-13 | 2019-07-30 | 2.9 | 3.04 | — | 3.0 | 0.005 | 0.66 | 0.0 | 0.05 | 13.67 | 0.00 | 2.135 | 6.78 | 0.00 | 6.5 | 93.5 | 0.0 | -3.60 | 0.75 | 0.86 | 3.81 | 3.0 | 0.004 | 0.59 | 0.0 | 0.05 | 16.34 | 0.00 | 2.102 | 6.36 | 1.60 | 5.9 | 94.1 | 0.0 | -0.91 | 0.43 | 0.74 | 0.87 | 3.48 | 25179 | 3238 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 7YHo | 33832 | 2023-12-07 | 2022-07-14 | 3.3 | 3.49 | 3.34 | 3.3 | 0.005 | 0.74 | 1.0 | 0.07 | 23.57 | 0.00 | 2.273 | 11.12 | 8.78 | 4.0 | 96.0 | 0.0 | 0.44 | 0.74 | 0.72 | 1.30 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 23.44 | 0.00 | 2.206 | 13.16 | 0.00 | 5.4 | 94.6 | 0.0 | -0.32 | 0.62 | 0.75 | 0.75 | 1.48 | 3923 | 361 | 4 | 49 | 1 | 0 | 0 | logfile |
✔ | 6BE1 | 7088 | 2023-12-15 | 2017-10-24 | 4.31 | 4.45 | — | 4.3 | 0.006 | 1.28 | 0.0 | 0.15 | 14.86 | 0.01 | 2.301 | 4.36 | 1.66 | 7.1 | 92.9 | 0.0 | -4.36 | 0.76 | 0.77 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.05 | 11.93 | 0.00 | 2.039 | 11.93 | 0.00 | 6.7 | 93.3 | 0.0 | -1.50 | 0.82 | 0.79 | 0.83 | — | 16910 | 1995 | 26 | 0 | 41 | 11 | 0 | logfile |
✔ | 7X8W | 33059 | 2023-12-08 | 2022-03-15 | 3.1 | 3.76 | 3.14 | 3.6 | 0.004 | 0.60 | 0.0 | 0.05 | 14.52 | 0.00 | 2.257 | 4.44 | 0.00 | 5.8 | 94.2 | 0.0 | -1.35 | 0.73 | 0.85 | 4.31 | 3.6 | 0.002 | 0.49 | 0.0 | 0.04 | 15.57 | 0.00 | 2.157 | 5.62 | 0.27 | 4.4 | 95.6 | 0.0 | -1.10 | 0.90 | 0.70 | 0.82 | 4.32 | 6674 | 435 | 5 | 0 | 8 | 0 | 3214 | logfile |
✔ | 7TNJ | 26011 | 2023-12-11 | 2022-01-21 | 4.02 | 3.16 | — | 3.3 | 0.005 | 0.94 | 0.0 | 0.05 | 11.63 | 0.01 | 2.246 | 3.87 | 0.20 | 3.6 | 96.4 | 0.0 | -4.89 | 0.65 | 0.72 | — | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.17 | 0.00 | 2.171 | 10.29 | 0.10 | 3.0 | 97.0 | 0.0 | 0.59 | 0.96 | 0.66 | 0.73 | — | 18810 | 2402 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N24 | 9322 | 2023-12-09 | 2018-11-12 | 3.0 | 3.88 | — | 3.7 | 0.007 | 0.78 | 0.0 | 0.05 | 9.04 | 0.01 | 2.332 | 3.60 | 0.29 | 3.6 | 96.4 | 0.0 | -6.07 | 0.73 | 0.84 | 3.71 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.098 | 7.33 | 1.80 | 2.1 | 97.9 | 0.0 | 0.21 | 2.31 | 0.63 | 0.72 | 3.01 | 12643 | 1530 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PKH | 13472 | 2023-12-15 | 2021-08-25 | 3.0 | 2.80 | 2.91 | 2.9 | 0.009 | 0.99 | 0.0 | 0.16 | 13.27 | 0.01 | 2.024 | 4.15 | 0.00 | 4.1 | 95.9 | 0.0 | -0.72 | 0.76 | 0.87 | 5.58 | 2.9 | 0.003 | 0.73 | 0.0 | 0.16 | 14.76 | 0.00 | 2.040 | 4.55 | 0.67 | 2.0 | 98.0 | 0.0 | 0.05 | 1.02 | 0.76 | 0.88 | 4.65 | 32420 | 2060 | 30 | 0 | 30 | 10 | 15960 | logfile |
✔ | 6FQ8 | 4299 | 2023-12-09 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.95 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.006 | 0.78 | 0.0 | 0.04 | 29.99 | 0.01 | 1.963 | 33.33 | 0.00 | 5.2 | 94.8 | 0.0 | 0.09 | 0.95 | 0.86 | 0.77 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 7P92 | 13258 | 2023-12-09 | 2021-07-23 | 2.7 | 2.17 | 2.57 | 2.3 | 0.003 | 0.56 | 1.0 | 0.04 | 14.12 | 0.00 | 1.985 | 4.69 | 0.18 | 3.7 | 96.3 | 0.0 | 0.23 | 0.52 | 0.78 | 3.78 | 2.4 | 0.002 | 0.52 | 0.0 | 0.04 | 17.07 | 0.00 | 2.196 | 5.77 | 1.20 | 2.7 | 97.3 | 0.0 | 0.75 | 1.88 | 0.51 | 0.78 | 3.47 | 10436 | 1322 | 9 | 0 | 12 | 157 | 0 | logfile |