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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Si3 | 25137 | 2024-01-20 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |
✘ | 8DJK | 27460 | 2024-01-18 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2024-01-18 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 6ZGK | 11209 | 2024-01-19 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2024-01-18 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 5ZWM | 6972 | 2024-01-18 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 8HoY | 34927 | 2024-01-20 | 2022-12-11 | 2.76 | 2.99 | 2.88 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 13.25 | 0.00 | 2.189 | 9.49 | 0.00 | 7.4 | 92.6 | 0.1 | -0.64 | 0.51 | 0.54 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13454 | 1650 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o2P | 0611 | 2024-01-18 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EWF | 28644 | 2024-01-18 | 2022-10-22 | 3.92 | 4.61 | 4.05 | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.761 | 21.32 | 0.88 | 6.6 | 93.4 | 0.0 | -1.26 | 0.51 | 0.66 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56534 | 3697 | 17 | 0 | 9 | 0 | 27869 | logfile |
✘ | 8ADW | 15372 | 2024-01-17 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2024-01-20 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 8H0P | 34413 | 2024-01-18 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XGR | 33187 | 2024-01-17 | 2022-04-06 | 2.6 | 3.38 | 2.47 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.88 | 0.00 | 2.259 | 8.70 | 2.17 | 6.3 | 93.7 | 0.0 | -0.28 | 0.52 | 0.75 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4340 | 546 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5K | 20648 | 2024-01-18 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HXX | 0297 | 2024-01-20 | 2018-10-18 | 3.4 | 3.76 | 3.51 | 3.7 | 0.008 | 1.14 | 0.0 | 0.07 | 12.31 | 0.01 | 1.586 | 8.35 | 0.28 | 8.1 | 91.9 | 0.0 | -3.79 | 0.53 | 0.84 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65765 | 7840 | 70 | 175 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-01-18 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8CTK | 26993 | 2024-01-17 | 2022-05-15 | 3.52 | 3.87 | 3.55 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.37 | 0.00 | 2.347 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -1.07 | 0.54 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3042 | 376 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2024-01-17 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XSU | 33435 | 2024-01-18 | 2022-05-15 | 3.4 | 3.68 | 3.45 | 3.7 | 0.011 | 1.61 | 9.0 | 0.11 | 19.27 | 0.01 | 1.440 | 12.45 | 5.06 | 5.5 | 94.1 | 0.4 | 1.66 | 0.55 | 0.75 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8969 | 1152 | 3 | 0 | 13 | 0 | 0 | logfile |