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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HC8 | 34655 | 2024-01-17 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.60 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 8CTK | 26993 | 2024-01-17 | 2022-05-15 | 3.52 | 3.87 | 3.55 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.37 | 0.00 | 2.347 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -1.07 | 0.54 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3042 | 376 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8B4o | 15851 | 2024-01-17 | 2022-09-20 | 2.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6156 | 772 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-01-17 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2024-01-17 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.94 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7Li9 | 23364 | 2024-01-17 | 2021-01-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6174 | 767 | 5 | 0 | 13 | 0 | 0 | logfile |
✘ | 7SVA | 25446 | 2024-01-17 | 2021-11-18 | 3.26 | 3.94 | 3.27 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.61 | 0.01 | 2.078 | 8.79 | 0.29 | 5.6 | 94.4 | 0.0 | -0.44 | 0.79 | 0.72 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6515 | 792 | 3 | 11 | 1 | 0 | 0 | logfile |
✘ | 7WCU | 32429 | 2024-01-17 | 2021-12-20 | 3.09 | 3.27 | — | 3.2 | 0.009 | 1.15 | 0.0 | 0.06 | 13.76 | 0.01 | 2.289 | 6.61 | 0.29 | 7.8 | 92.2 | 0.0 | -2.63 | 0.61 | 0.82 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3248 | 416 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7M3N | 23658 | 2024-01-17 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ESA | 28573 | 2024-01-17 | 2022-10-13 | 3.4 | 3.68 | 3.37 | 3.6 | 0.004 | 0.49 | 0.0 | 0.04 | 14.83 | 0.00 | 2.243 | 5.75 | 0.30 | 4.0 | 96.0 | 0.0 | -0.99 | 0.65 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3140 | 384 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WPo | 32686 | 2024-01-17 | 2022-01-24 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.64 | 6.0 | 0.11 | 11.46 | 0.01 | 2.359 | 5.22 | 0.48 | 2.6 | 97.3 | 0.1 | -0.13 | 0.70 | 0.79 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6829 | 867 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2024-01-17 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 6CT0 | 7610 | 2024-01-17 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-01-17 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2024-01-17 | 2022-04-21 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2024-01-17 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-01-17 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 5LMU | 4080 | 2024-01-17 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 26.67 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✘ | 7ZRZ | 14923 | 2024-01-17 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7Y8A | 33683 | 2024-01-17 | 2022-06-23 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53404 | 4518 | 49 | 0 | 502 | 0 | 0 | logfile |