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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DBH | 30631 | 2024-01-19 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 7SRR | 25402 | 2024-01-19 | 2021-11-08 | 2.9 | 2.20 | — | 2.0 | 0.005 | 0.67 | 0.0 | 0.05 | 12.70 | 0.00 | 2.196 | 3.95 | 0.12 | 3.4 | 96.6 | 0.0 | 0.15 | 0.80 | 0.78 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8394 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EWF | 28644 | 2024-01-18 | 2022-10-22 | 3.92 | 4.61 | 4.05 | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.761 | 21.32 | 0.88 | 6.6 | 93.4 | 0.0 | -1.26 | 0.51 | 0.66 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56534 | 3697 | 17 | 0 | 9 | 0 | 27869 | logfile |
✘ | 8BLo | 16110 | 2024-01-18 | 2022-11-10 | 2.9 | 3.05 | 2.97 | 3.1 | 0.007 | 0.69 | 0.0 | 0.04 | 17.38 | 0.00 | 2.328 | 7.94 | 0.98 | 2.9 | 96.9 | 0.3 | -1.47 | 0.67 | 0.87 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8487 | 1056 | 9 | 0 | 24 | 18 | 0 | logfile |
✘ | 8P2S | 17373 | 2024-01-18 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-01-19 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2024-01-18 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.92 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7B5N | 12041 | 2024-01-19 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.46 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✘ | 8FYi | 29579 | 2024-01-20 | 2023-01-26 | 3.4 | 3.73 | 3.49 | 3.7 | 0.005 | 0.68 | 0.0 | 0.05 | 16.64 | 0.00 | 2.200 | 10.41 | 0.18 | 3.2 | 96.8 | 0.0 | -1.26 | 0.74 | 0.87 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15364 | 1844 | 19 | 0 | 56 | 0 | 0 | logfile |
✘ | 8SHD | 40484 | 2024-01-20 | 2023-04-13 | 2.9 | 3.43 | 2.96 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.80 | 0.00 | 1.928 | 6.69 | 0.00 | 3.3 | 96.7 | 0.0 | 1.61 | 0.84 | 0.88 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66069 | 8588 | 49 | 0 | 48 | 19 | 0 | logfile |
✘ | 7ZZ6 | 15036 | 2024-01-18 | 2022-05-25 | 2.15 | 2.39 | 2.12 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 17.30 | 0.00 | 1.385 | 8.71 | 3.48 | 2.9 | 97.1 | 0.0 | 0.64 | 0.91 | 0.90 | 4.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8257 | 1017 | 6 | 0 | 6 | 157 | 0 | logfile |
✘ | 8iES | 35392 | 2024-01-18 | 2023-02-15 | 3.73 | 4.01 | 3.68 | 4.0 | 0.003 | 1.16 | 0.0 | 0.04 | 13.70 | 0.00 | 2.268 | 5.19 | 0.00 | 6.0 | 94.0 | 0.0 | -3.84 | 0.60 | 0.66 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7965 | 1026 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6U5P | 20652 | 2024-01-20 | 2019-08-28 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.75 | 0.0 | 0.05 | 14.37 | 0.00 | 2.236 | 3.96 | 0.43 | 4.4 | 95.6 | 0.0 | -3.37 | 0.70 | 0.83 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13308 | 1776 | 24 | 0 | 24 | 8 | 0 | logfile |
✘ | 8iLR | 35543 | 2024-01-19 | 2023-03-04 | 3.05 | 3.24 | 3.08 | 3.3 | 0.003 | 0.45 | 1.0 | 0.04 | 15.95 | 0.00 | 1.967 | 27.72 | 0.35 | 4.5 | 95.5 | 0.1 | 0.10 | 0.73 | 0.82 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10374 | 1253 | 3 | 0 | 1 | 7 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-01-17 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 8JYP | 36729 | 2024-01-19 | 2023-07-03 | 3.38 | 4.15 | 3.49 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 14.74 | 0.00 | 2.291 | 5.18 | 0.00 | 2.5 | 97.5 | 0.0 | 0.39 | 0.84 | 0.84 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6627 | 795 | 7 | 0 | 14 | 0 | 0 | logfile |
✘ | 7YFC | 33785 | 2024-01-19 | 2022-07-08 | 3.0 | 3.40 | 3.05 | 3.4 | 0.005 | 0.66 | 0.0 | 0.04 | 18.01 | 0.00 | 2.198 | 5.98 | 0.09 | 2.5 | 97.5 | 0.0 | 1.05 | 0.65 | 0.82 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9882 | 1262 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 7C77 | 30294 | 2024-01-18 | 2020-05-23 | 3.3 | 3.60 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.65 | 0.00 | 2.209 | 9.34 | 1.88 | 5.0 | 94.9 | 0.1 | -2.63 | 0.58 | 0.75 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9762 | 1183 | 9 | 0 | 20 | 0 | 0 | logfile |
✘ | 7SBF | 24978 | 2024-01-18 | 2021-09-24 | 2.9 | 3.28 | — | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 12.82 | 0.00 | 2.200 | 7.87 | 0.23 | 3.8 | 96.1 | 0.1 | -0.02 | 0.75 | 0.82 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8525 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |