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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7E2Z | 30973 | 2024-01-18 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2024-01-19 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 7EFD | 31084 | 2024-01-17 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 6N27 | 9325 | 2024-01-20 | 2018-11-12 | 3.0 | 3.04 | — | 3.0 | 0.007 | 0.88 | 0.0 | 0.05 | 9.61 | 0.01 | 2.305 | 3.26 | 0.00 | 1.8 | 98.2 | 0.0 | -2.91 | 0.72 | 0.86 | 4.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13930 | 1695 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 7UTN | 26782 | 2024-01-18 | 2022-04-27 | 2.74 | 3.33 | 2.90 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 22.97 | 0.00 | 2.080 | 8.58 | 0.00 | 1.8 | 98.2 | 0.0 | 0.01 | 0.86 | 0.88 | 4.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8003 | 397 | 4 | 228 | 0 | 0 | 0 | logfile |
✘ | 7YLU | 33917 | 2024-01-19 | 2022-07-27 | 4.55 | 4.26 | 5.68 | 4.4 | 0.002 | 0.44 | 0.0 | 0.04 | 6.30 | 0.00 | 1.304 | 3.45 | 0.11 | 1.9 | 98.0 | 0.1 | 2.63 | 0.69 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65607 | 8578 | 17 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-01-17 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2024-01-18 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✘ | 8DTB | 27695 | 2024-01-20 | 2022-07-25 | 3.14 | 3.27 | 3.11 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.08 | 0.00 | 2.175 | 9.05 | 0.99 | 1.9 | 98.1 | 0.0 | 1.18 | 0.66 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13724 | 1765 | 9 | 0 | 7 | 0 | 0 | logfile |
✘ | 7UPi | 26667 | 2024-01-18 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.56 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2024-01-18 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✘ | 8oUW | 17204 | 2024-01-17 | 2023-04-25 | 3.75 | 3.90 | 3.25 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 14.71 | 0.01 | 2.008 | 0.19 | 0.38 | 2.0 | 98.0 | 0.0 | 0.31 | 0.81 | 0.65 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53754 | 6564 | 25 | 67 | 13 | 0 | 0 | logfile |
✘ | 8F7X | 28912 | 2024-01-18 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CS9 | 26960 | 2024-01-18 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-01-20 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EoR | 28465 | 2024-01-19 | 2022-10-04 | 2.67 | 2.82 | 2.67 | 2.9 | 0.004 | 0.64 | 0.0 | 0.04 | 13.33 | 0.00 | 2.303 | 2.64 | 0.45 | 2.2 | 97.8 | 0.0 | 0.50 | 0.60 | 0.75 | 4.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12522 | 1596 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 7ZZ2 | 15032 | 2024-01-17 | 2022-05-25 | 2.48 | 2.80 | 2.37 | 2.1 | 0.005 | 0.76 | 0.0 | 0.05 | 17.25 | 0.01 | 2.132 | 4.21 | 3.27 | 2.2 | 97.8 | 0.0 | -0.30 | 0.90 | 0.89 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4366 | 541 | 1 | 0 | 3 | 57 | 0 | logfile |
✘ | 7K45 | 22660 | 2024-01-17 | 2020-09-14 | 3.7 | 3.90 | 3.76 | 3.9 | 0.014 | 1.42 | 0.0 | 0.08 | 9.35 | 0.01 | 2.568 | 0.35 | 0.00 | 2.2 | 97.8 | 0.0 | 0.92 | 0.79 | 0.78 | 4.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3038 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PUZ | 20485 | 2024-01-19 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.79 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✘ | 7K0K | 22600 | 2024-01-18 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.49 | 0.00 | 1.915 | 7.43 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |