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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7NFD | 12300 | 2024-01-19 | 2021-02-06 | 3.51 | 3.83 | — | 3.8 | 0.009 | 1.02 | 1.0 | 0.05 | 16.11 | 0.00 | 2.071 | 25.27 | 0.37 | 15.9 | 84.0 | 0.1 | -5.50 | 0.62 | 0.81 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12394 | 1582 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6o2P | 0611 | 2024-01-18 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✘ | 8F54 | 28860 | 2024-01-20 | 2022-11-11 | 2.5 | 2.67 | 2.56 | 2.7 | 0.003 | 0.45 | 0.0 | 0.03 | 11.59 | 0.00 | 2.491 | 0.57 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.68 | 0.76 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66960 | 4020 | 60 | 0 | 0 | 0 | 33840 | logfile |
✘ | 7ZPo | 14859 | 2024-01-20 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✘ | 7F62 | 31470 | 2024-01-17 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EoR | 28465 | 2024-01-19 | 2022-10-04 | 2.67 | 2.82 | 2.67 | 2.9 | 0.004 | 0.64 | 0.0 | 0.04 | 13.33 | 0.00 | 2.303 | 2.64 | 0.45 | 2.2 | 97.8 | 0.0 | 0.50 | 0.60 | 0.75 | 4.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12522 | 1596 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 7oZ1 | 13118 | 2024-01-18 | 2021-06-25 | 4.0 | 3.41 | — | 4.0 | 0.006 | 0.92 | 0.0 | 0.05 | 16.76 | 0.00 | 2.109 | 14.20 | 0.21 | 7.6 | 92.4 | 0.0 | -3.23 | 0.61 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8942 | 1088 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 8oMo | 16973 | 2024-01-19 | 2023-03-31 | 3.43 | 2.51 | 3.47 | 3.2 | 0.007 | 1.36 | 2.0 | 0.09 | 17.68 | 0.00 | 1.488 | 21.48 | 4.68 | 8.0 | 92.0 | 0.0 | -3.82 | 0.75 | 0.80 | 1.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10290 | 1288 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8J1Q | 35930 | 2024-01-17 | 2023-04-13 | 3.3 | 4.10 | 3.20 | 3.9 | 0.030 | 1.93 | 0.0 | 0.05 | 28.59 | 0.00 | 2.043 | 8.92 | 0.28 | 7.1 | 92.9 | 0.0 | -1.02 | 0.73 | 0.64 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5447 | 427 | 5 | 90 | 1 | 0 | 0 | logfile |
✘ | 7NVL | 12605 | 2024-01-20 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.72 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-01-20 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2024-01-18 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DZQ | 27805 | 2024-01-18 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7M3N | 23658 | 2024-01-17 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UoP | 26652 | 2024-01-20 | 2022-04-13 | 2.8 | 3.24 | 2.81 | 3.1 | 0.004 | 0.59 | 0.0 | 0.05 | 12.28 | 0.00 | 2.126 | 2.36 | 1.02 | 2.4 | 97.6 | 0.0 | 0.45 | 0.81 | 0.83 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15702 | 2010 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6S6B | 10102 | 2024-01-20 | 2019-07-02 | 2.75 | 3.35 | 3.07 | 3.2 | 0.005 | 0.76 | 0.0 | 0.05 | 14.86 | 0.00 | 1.961 | 19.06 | 0.15 | 15.3 | 84.3 | 0.4 | -5.13 | 0.77 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66914 | 8194 | 39 | 51 | 1 | 0 | 0 | logfile |
✘ | 7SJ0 | 25149 | 2024-01-17 | 2021-10-15 | 3.36 | 3.33 | 3.46 | 3.7 | 0.003 | 0.66 | 0.0 | 0.05 | 12.81 | 0.00 | 2.225 | 4.12 | 0.00 | 5.9 | 94.1 | 0.0 | -1.98 | 0.69 | 0.79 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3590 | 452 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 8FDU | 29014 | 2024-01-20 | 2022-12-04 | 3.3 | 3.75 | 3.30 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 13.46 | 0.00 | 2.212 | 12.19 | 0.21 | 4.1 | 95.9 | 0.1 | -0.29 | 0.66 | 0.78 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13193 | 1633 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-01-18 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-01-19 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |