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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DBH | 30631 | 2024-01-19 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 7SRR | 25402 | 2024-01-19 | 2021-11-08 | 2.9 | 2.20 | — | 2.0 | 0.005 | 0.67 | 0.0 | 0.05 | 12.70 | 0.00 | 2.196 | 3.95 | 0.12 | 3.4 | 96.6 | 0.0 | 0.15 | 0.80 | 0.78 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8394 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EWF | 28644 | 2024-01-18 | 2022-10-22 | 3.92 | 4.61 | 4.05 | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.761 | 21.32 | 0.88 | 6.6 | 93.4 | 0.0 | -1.26 | 0.51 | 0.66 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56534 | 3697 | 17 | 0 | 9 | 0 | 27869 | logfile |
✘ | 6V4U | 21048 | 2024-01-18 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7R1D | 14239 | 2024-01-17 | 2022-02-02 | 3.5 | 3.51 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 13.61 | 0.01 | 2.097 | 17.88 | 0.00 | 7.1 | 92.9 | 0.0 | -1.31 | 0.77 | 0.79 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5183 | 653 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N7S | 0362 | 2024-01-19 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2024-01-18 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.92 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZEB | 14688 | 2024-01-20 | 2022-03-30 | 3.8 | 3.81 | — | 3.7 | 0.004 | 0.85 | 0.0 | 1.03 | 16.92 | 0.01 | 2.202 | 5.98 | 0.46 | 3.8 | 96.2 | 0.0 | -0.77 | 0.90 | 0.84 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66396 | 8195 | 60 | 0 | 22 | 0 | 0 | logfile |
✘ | 8FYi | 29579 | 2024-01-20 | 2023-01-26 | 3.4 | 3.73 | 3.49 | 3.7 | 0.005 | 0.68 | 0.0 | 0.05 | 16.64 | 0.00 | 2.200 | 10.41 | 0.18 | 3.2 | 96.8 | 0.0 | -1.26 | 0.74 | 0.87 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15364 | 1844 | 19 | 0 | 56 | 0 | 0 | logfile |
✘ | 8HQZ | 34955 | 2024-01-20 | 2022-12-14 | 3.8 | 4.30 | 3.84 | 4.1 | 0.010 | 0.85 | 0.0 | 0.05 | 12.88 | 0.02 | 1.714 | 3.60 | 0.08 | 3.7 | 96.3 | 0.0 | -1.21 | 0.84 | 0.82 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66381 | 8490 | 39 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SHD | 40484 | 2024-01-20 | 2023-04-13 | 2.9 | 3.43 | 2.96 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.80 | 0.00 | 1.928 | 6.69 | 0.00 | 3.3 | 96.7 | 0.0 | 1.61 | 0.84 | 0.88 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66069 | 8588 | 49 | 0 | 48 | 19 | 0 | logfile |
✘ | 8iES | 35392 | 2024-01-18 | 2023-02-15 | 3.73 | 4.01 | 3.68 | 4.0 | 0.003 | 1.16 | 0.0 | 0.04 | 13.70 | 0.00 | 2.268 | 5.19 | 0.00 | 6.0 | 94.0 | 0.0 | -3.84 | 0.60 | 0.66 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7965 | 1026 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HRL | 34977 | 2024-01-17 | 2022-12-15 | 2.8 | 3.03 | 2.84 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 18.12 | 0.01 | 2.124 | 7.19 | 1.59 | 4.7 | 95.3 | 0.0 | -1.16 | 0.64 | 0.73 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6412 | 791 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8PoG | 17791 | 2024-01-17 | 2023-07-04 | 4.15 | 4.36 | 4.10 | 4.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.83 | 0.01 | 2.242 | 5.44 | 0.00 | 2.3 | 97.7 | 0.0 | 0.40 | 0.77 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4964 | 624 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-01-17 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 8JYP | 36729 | 2024-01-19 | 2023-07-03 | 3.38 | 4.15 | 3.49 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 14.74 | 0.00 | 2.291 | 5.18 | 0.00 | 2.5 | 97.5 | 0.0 | 0.39 | 0.84 | 0.84 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6627 | 795 | 7 | 0 | 14 | 0 | 0 | logfile |
✘ | 7K45 | 22660 | 2024-01-17 | 2020-09-14 | 3.7 | 3.90 | 3.76 | 3.9 | 0.014 | 1.42 | 0.0 | 0.08 | 9.35 | 0.01 | 2.568 | 0.35 | 0.00 | 2.2 | 97.8 | 0.0 | 0.92 | 0.79 | 0.78 | 4.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3038 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VHP | 32002 | 2024-01-20 | 2021-09-22 | 3.27 | 3.30 | — | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.46 | 0.00 | 1.149 | 15.64 | 0.32 | 3.1 | 96.8 | 0.0 | 1.82 | 0.78 | 0.73 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66600 | 8304 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZGK | 11209 | 2024-01-19 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |