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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2024-01-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Si3 | 25137 | 2024-01-20 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |
✘ | 6ZGK | 11209 | 2024-01-19 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S8o | 24899 | 2024-01-18 | 2021-09-18 | 2.58 | 2.12 | 2.59 | 1.9 | 0.007 | 0.72 | 0.0 | 0.05 | 13.52 | 0.00 | 2.102 | 3.18 | 0.00 | 5.8 | 94.2 | 0.0 | 0.31 | 0.81 | 0.80 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8331 | 1101 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2024-01-18 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2024-01-18 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2024-01-19 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✘ | 7DFZ | 30668 | 2024-01-18 | 2020-11-10 | 3.58 | 3.82 | — | 3.8 | 0.010 | 0.99 | 0.0 | 0.06 | 15.65 | 0.03 | 2.157 | 18.62 | 0.00 | 7.1 | 92.9 | 0.0 | -3.56 | 0.63 | 0.80 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7412 | 897 | 7 | 0 | 24 | 0 | 0 | logfile |
✘ | 7LPE | 23479 | 2024-01-20 | 2021-02-11 | 3.72 | 4.18 | 3.77 | 4.0 | 0.011 | 1.29 | 0.0 | 0.06 | 17.20 | 0.01 | 2.219 | 11.71 | 0.00 | 6.1 | 93.9 | 0.0 | -0.86 | 0.60 | 0.67 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13844 | 1944 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-01-19 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VEF | 21156 | 2024-01-20 | 2019-12-31 | 4.08 | 4.14 | — | 4.1 | 0.009 | 1.19 | 0.0 | 0.07 | 11.76 | 0.01 | 1.866 | 12.07 | 0.00 | 10.4 | 89.5 | 0.1 | -4.48 | 0.77 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13414 | 1688 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WSi | 32759 | 2024-01-17 | 2022-01-29 | 3.32 | 3.90 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.25 | 0.00 | 2.122 | 8.82 | 0.00 | 7.9 | 92.1 | 0.0 | -0.23 | 0.66 | 0.77 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5701 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HUP | 0283 | 2024-01-20 | 2018-10-09 | 3.58 | 3.70 | 3.52 | 3.6 | 0.013 | 1.19 | 0.0 | 0.08 | 13.87 | 0.01 | 2.251 | 5.90 | 0.00 | 4.9 | 95.1 | 0.0 | -3.42 | 0.72 | 0.85 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15265 | 1808 | 17 | 0 | 37 | 0 | 0 | logfile |
✘ | 7WTG | 32785 | 2024-01-17 | 2022-02-04 | 3.8 | 3.93 | — | 3.9 | 0.006 | 1.20 | 0.0 | 0.07 | 14.44 | 0.01 | 2.297 | 4.61 | 0.00 | 9.1 | 90.9 | 0.0 | -2.94 | 0.67 | 0.73 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3318 | 425 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZRi | 14915 | 2024-01-19 | 2022-05-04 | 3.5 | 3.62 | 3.50 | 3.6 | 0.006 | 0.92 | 0.0 | 0.05 | 16.16 | 0.01 | 2.196 | 7.56 | 0.00 | 4.6 | 95.4 | 0.0 | -1.22 | 0.70 | 0.82 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11014 | 1450 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2024-01-18 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6N27 | 9325 | 2024-01-20 | 2018-11-12 | 3.0 | 3.04 | — | 3.0 | 0.007 | 0.88 | 0.0 | 0.05 | 9.61 | 0.01 | 2.305 | 3.26 | 0.00 | 1.8 | 98.2 | 0.0 | -2.91 | 0.72 | 0.86 | 4.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13930 | 1695 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2024-01-19 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 7W0M | 32244 | 2024-01-19 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.004 | 0.76 | 0.0 | 0.05 | 14.11 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8HiJ | 34818 | 2024-01-18 | 2022-11-20 | 3.54 | 2.56 | 3.51 | 3.0 | 0.004 | 0.72 | 1.0 | 0.05 | 9.92 | 0.01 | 2.315 | 3.83 | 0.00 | 5.2 | 94.8 | 0.0 | -3.81 | 0.69 | 0.69 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8245 | 1055 | 5 | 0 | 1 | 0 | 0 | logfile |