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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8JPF | 36478 | 2023-12-07 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8PBB | 17583 | 2023-12-10 | 2023-06-09 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13334 | 1684 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8P97 | 17574 | 2023-12-08 | 2023-06-05 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7837 | 958 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8P98 | 17575 | 2023-12-08 | 2023-06-05 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7830 | 956 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JLR | 36405 | 2023-12-08 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8934 | 1130 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JLQ | 36404 | 2023-12-08 | 2023-06-02 | 2.84 | 3.01 | 2.88 | 3.1 | 0.005 | 0.78 | 1.0 | 0.05 | 13.14 | 0.00 | 2.203 | 18.53 | 0.41 | 4.0 | 96.0 | 0.0 | -0.45 | 0.59 | 0.69 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9033 | 1140 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8T1E | 40961 | 2023-12-12 | 2023-06-02 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22115 | 2516 | 12 | 0 | 43 | 36 | 0 | logfile |
✘ | 8T1J | 40969 | 2023-12-08 | 2023-06-02 | 2.7 | 2.99 | 2.81 | 3.0 | 0.012 | 1.45 | 0.0 | 0.07 | 12.84 | 0.01 | 2.502 | 0.95 | 0.00 | 2.4 | 97.6 | 0.0 | 0.15 | 0.76 | 0.80 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6973 | 840 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 8T1P | 40974 | 2023-12-12 | 2023-06-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20551 | 1239 | 4 | 0 | 25 | 0 | 9964 | logfile |
✘ | 8T1B | 40958 | 2023-12-12 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23180 | 2576 | 12 | 0 | 52 | 72 | 0 | logfile |
✘ | 8Jii | 36312 | 2023-12-08 | 2023-05-26 | 3.17 | 2.37 | — | 3.4 | 0.006 | 0.84 | 0.0 | 0.05 | 14.12 | 0.00 | 1.963 | 7.59 | 0.10 | 4.6 | 95.4 | 0.0 | -1.97 | 0.74 | 0.78 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9083 | 1144 | 6 | 0 | 3 | 1 | 0 | logfile |
✘ | 8P5W | 17455 | 2023-12-07 | 2023-05-24 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52656 | 6714 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 8SS7 | 40746 | 2023-12-11 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 22.55 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8SS6 | 40745 | 2023-12-15 | 2023-05-08 | 3.01 | 3.32 | 3.16 | 3.3 | 0.017 | 1.38 | 0.0 | 0.28 | 19.01 | 0.01 | 2.303 | 4.80 | 1.05 | 7.9 | 91.7 | 0.4 | -5.47 | 0.68 | 0.76 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31609 | 3794 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8SSA | 40749 | 2023-12-15 | 2023-05-08 | 3.88 | 4.18 | 3.96 | 4.1 | 0.010 | 1.32 | 0.0 | 0.06 | 14.93 | 0.01 | 2.213 | 6.33 | 1.00 | 11.4 | 87.6 | 1.0 | -5.19 | 0.70 | 0.77 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3840 | 10 | 0 | 13 | 0 | 0 | logfile |
✘ | 8JAU | 36134 | 2023-12-11 | 2023-05-07 | 3.22 | 3.52 | 3.25 | 3.6 | 0.004 | 0.52 | 0.0 | 0.04 | 14.40 | 0.00 | 2.183 | 7.18 | 0.05 | 4.0 | 96.0 | 0.0 | -0.99 | 0.70 | 0.75 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17064 | 2096 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JA7 | 36125 | 2023-12-10 | 2023-05-05 | 3.02 | 3.83 | 3.16 | 3.5 | 0.004 | 0.62 | 0.0 | 0.11 | 13.44 | 0.00 | 2.158 | 15.41 | 0.00 | 4.8 | 95.2 | 0.0 | -3.10 | 0.71 | 0.86 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13601 | 1784 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8J7V | 36050 | 2023-12-09 | 2023-04-28 | 2.79 | 2.88 | 2.79 | 2.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.71 | 0.01 | 2.208 | 7.08 | 1.54 | 3.3 | 96.7 | 0.0 | 0.39 | 0.62 | 0.79 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11083 | 1432 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8So3 | 40646 | 2023-12-11 | 2023-04-28 | 3.61 | 3.84 | 3.58 | 3.8 | 0.005 | 0.85 | 1.0 | 0.05 | 13.96 | 0.01 | 1.803 | 10.38 | 0.68 | 6.5 | 93.4 | 0.2 | -1.49 | 0.73 | 0.72 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16718 | 1205 | 8 | 0 | 4 | 0 | 7947 | logfile |
✘ | 8J7Y | 36053 | 2023-12-09 | 2023-04-28 | 3.4 | 3.79 | 3.40 | 3.7 | 0.002 | 0.50 | 0.0 | 0.04 | 13.14 | 0.00 | 1.914 | 7.04 | 0.16 | 3.1 | 96.9 | 0.0 | 1.40 | 0.75 | 0.80 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11008 | 1426 | 8 | 0 | 2 | 0 | 0 | logfile |